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4 protocols using 3 ethoxy 4 methoxyphenol

1

Arachidonic Acid and Inflammatory Modulators

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Arachidonic acid (AA: 5,8,11,14-eicosatetraenoic acid), dexamethasone [DEX: (11β, 16α)-9-fluoro-11,17,21-trihydroxy-16-methylpregna-1,4-diene-3], naproxen [NAP: (S)-(+)-2-(6-methoxy-2-naphthyl)propionic acid], esculetin (ESC: 6-hydroxy-7-methoxycoumarin), 3-ethoxy-4-methoxyphenol (EMP) were purchased from Sigma-Aldrich Korea (Seoul, Korea) and dissolved in dimethyl sulfoxide (DMSO). Leukotriene B4 (LTB4: 5S,12R-dihydroxy-6Z,8E,10E,14Z-eicosatetraenoic acid) was purchased from Cayman Chemicals (Ann Arbor, MI, USA) and dissolved in DMSO. Prostaglandin E2 (PGE2: (5Z,11α,13E,15S)-11,15-dihydroxy-9-oxoprosta-5,13-dienoic acid), prostaglandin D2 (PGD2: 9α,15S-dihydroxy-11-oxoprosta-5Z,13E-dien-1-oic acid), 2-aminoethoxydiphenylborate (2-APB), dantrolene sodium (DAN: 1-[(5-(p-nitrophenyl) furfurylidene)amino] hydantoin sodium salt), and U-73122 (1-[6-[((17β)-3-methoxyestra-1,3,5[10]-trien-17-yl)amino]hexyl]-1H-pyrrole-2,5-dione) were purchased from Sigma-Aldrich Korea and dissolved in DMSO. Fura-8AM was purchased from AAT Bioquest (Sunnyvale, CA, USA) and dissolved in DMSO. Paraquat (1,1′-dimethyl-4,4′-bipyridinium dichloride hydrate) and vitamin C (L-ascorbic acid) were purchased from Sigma-Aldrich Korea and dissolved in distilled water. Phosphate-buffered saline (PBS) was prepared with 100 mM phosphoric acid and adjusted to pH 7.4.
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2

Extraction and Dissolution of Bacterial Metabolites

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Identified bacterial metabolites such as Phthalimide (PM), o-Cyanobenzoic acid (CBA), and 3-Ethoxy-4-Methoxyphenol (EMP) were obtained from Sigma-Aldrich Korea (Seoul, Korea) and dimethylsulfoxide (DMSO) was used to dissolve these. Trizol reagent was collected from Invitrogen Korea (Seoul, Korea) and used for RNA extraction. Chloroform and Ethanol were collected from Sigma-Aldrich Korea (Seoul, Korea). Phosphate-buffered saline (PBS, pH 7.4) was prepared in the laboratory with 100 mM phosphoric acid and 0.7% sodium chloride. Anticoagulant buffer (ACB, pH 4.5) containing 186 mM NaCl, 17 mM Na2EDTA, and 41 mM citric acid was prepared in the laboratory.
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3

Arachidonic Acid and Inflammation Modulators

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Arachidonic acid (AA: 5,8,11,14-eicosatetraenoic acid), dexamethasone [DEX (11β, 16α)-9-fluoro-11,17,21-trihydroxy-16-methylpregna-1,4-diene-3], naproxen [NAP (S)-(+)-2-(6-methoxy-2-naphthyl)propionic acid], esculetin (ESC: 6-hydroxy-7-methoxycoumarin), 3-ethoxy-4-methoxyphenol (EMP) as a specific inhibitor to DSP1 [22 (link)], and PGE2 ((5Z,11α,13E,15S)-11,15-dihydroxy-9-oxoprosta-5,13-dienoic acid) were purchased from Sigma-Aldrich Korea (Seoul, Korea) and leukotriene B4 (LTB4: 5S,12R-dihydroxy-6Z,8E,10E,14Z-eicosatetraenoic acid) was purchased from Cayman Chemicals (Ann Arbor, MI, USA). These chemicals were supplied in acetone, ethanol, or powder form. Chemicals in powder form were directly dissolved in dimethyl sulfoxide (DMSO) and stock concentrations (100 μg/µL or 105 ppm) were prepared. In case of chemicals in acetone or ethanol, they were dried with nitrogen gas under a fume hood and then prepared in stock concentrations (100 μg/µL or 105 ppm) with DMSO. Finally, a working solution (1,000 ppm) was prepared by a serial dilution using DMSO. Fura-8AM was purchased from AAT Bioquest (Sunnyvale, CA, USA) and dissolved in DMSO. Phosphate-buffered saline (PBS) was prepared with 100 mM phosphoric acid and adjusted to pH 7.4.
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4

Synthesis and Characterization of Bioactive Compounds

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Phthalimide (PM), 3-Ethoxy-4-methoxyphenol (EMP), o-cyanobenzoic acid (CBA), dibutylamine (DBA), bis-2 (ethylhexyl) phthalate (BEP), indole (IND), hexahydro-3-(2-methylpropyl)-pyrrolopyrazine-1,4-dione (HMPP), and salicylic acid (SA) were purchased from Sigma-Aldrich Korea (Seoul, Korea) and dissolved in dimethylsulfoxide (DMSO). Phosphate-buffered saline (PBS, pH 7.4) was prepared with 100 mM phosphoric acid and 0.7% sodium chloride. Anticoagulant buffer (ACB, pH 4.5) was prepared to contain 186 mM NaCl, 17 mM Na2EDTA, and 41 mM citric acid. A transfection reagent (Metafectene Pro) was purchased from Biontex (Plannegg, Germany).
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