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Dimethylaminobenzoaldehyde

Manufactured by Merck Group

Dimethylaminobenzoaldehyde is a chemical compound used in various laboratory applications. It functions as an analytical reagent, primarily employed in colorimetric assays and detection methods. The compound's core property is its ability to undergo a color-changing reaction when exposed to specific analytes, making it a useful tool for identifying and quantifying certain substances in a sample.

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5 protocols using dimethylaminobenzoaldehyde

1

Quantitative Analysis of Extracellular Matrix Components

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Gels were digested in a papain digestion buffer (250 µg/mL papain; Sigma-Aldrich,
0.2 M NaH2PO4, 0.1 M ethylenediaminetetraacetic acid
[EDTA], 0.01 M cysteine, pH 6) at 60°C overnight. Glycosaminoglycan (GAG)
content was measured using a dimethylmethylene blue (DMMB; pH 3) assay with
chondroitin-6-sulfate (Sigma-Aldrich) as a standard. Absorbance ratio of 525/595
nm was measured using a spectrophotometer. DNA content in the digests was
quantified using a Quant-iT PicoGreen dsDNA assay (Invitrogen) according to the
manufacturer’s instruction. Collagen content was determined by measuring the
hydroxyproline content29 (link)
. Digested samples were lyophilized and hydrolyzed in 4 M NaOH
(Sigma-Aldrich) in Milli-Q water at 108°C overnight. The next day, samples were
neutralized using 1.4 M citric acid (Sigma-Aldrich) in Milli-Q water, after
which 50 mM freshly prepared Chloramin-T (Merck) in oxidation buffer was added.
Samples were incubated under agitation for 20 minutes, after which 1.1 M freshly
prepared dimethylaminobenzoaldehyde (Merck) in 25% (w/v) perchloric acid (Merck)
in 2-propanol (Sigma-Aldrich) was added. After incubation for 20 minutes at
60°C, samples were cooled and absorbance at 570 nm was measured using
hydroxyproline (Merck) as a standard.
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2

Quantifying Cartilage Matrix Composition

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Pellets were harvested after 28 days to measure glycosaminoglycan (GAG), collagen, and DNA content. Samples were digested overnight in a papain digestion buffer (250 μg/mL papain; Sigma-Aldrich, 0.2 M NaH2PO4, 0.1M EDTA, 0.01M cysteine, pH 6) at 60°C.
Sulfated GAG content was quantified using a dimethylmethylene blue (DMMB; pH 3) assay. The 525/595 nm absorbance ratio was measured using chondroitin-6-sulfate (Sigma-Aldrich) as a standard.
Total collagen content was calculated from the hydroxyproline content (Neuman and Logan, 1950 (link)). papain digests were lyophilized and hydrolyzed in 4 M NaOH (Sigma-Aldrich) in Milli-Q water overnight at 108°C, after which samples were neutralized with 1.4 M citric acid (Sigma-Aldrich) in Milli-Q water. 50 mM freshly prepared Chloramin-T (Merck) in oxidation buffer was added and incubated for 20 min under agitation. Subsequently, 1.1 M freshly prepared dimethylaminobenzoaldehyde (Merck) in 25% (v/v) perchloric acid (Merck) in 2-propanol (Sigma-Aldrich) was added and incubated for 20 min at 60°C. Samples were cooled and absorbance read at 570 nm using hydroxyproline (Merck) as a standard.
Total DNA content was quantified using a Quant-iT PicoGreen dsDNA assay (Invitrogen) according to the manufacturer’s instructions. Fluorescence was measured at 485 nm excitation and 535 nm emission by a microplate fluorometer (Fluoroskan Ascent).
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3

Quantification of Extracellular Matrix Components

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Pellets were harvested after 28 days and digested using a papain digestion buffer (250 µg/mL papain; Sigma-Aldrich, 0.2 M NaH2PO4, 0.1 M ethylenediaminetetraacetic acid [EDTA], 0.01 M cysteine, pH 6) at 60 °C overnight. GAG content in the digests (deposition) and medium (release) was assessed using a dimethylmethylene blue (DMMB; pH 3) assay to quantify sulphated GAGs. The absorbance was measured at 525 and 595 nm using a spectrophotometer and the ratio at 525/595 nm calculated. Chondroitin-6-sulfate (Sigma-Aldrich) was used as a standard.
For the analysis of collagen deposition, digests were lyophilized followed by a hydrolyzation in 4 M NaOH overnight at 108 °C. Samples were neutralized using 1.4 M citric acid. Then, 50 mM chloramine-T (Merck, Darmstadt, Germany) in oxidation buffer was added. After 20 min incubation, dimethylaminobenzoaldehyde (Merck) in 25% (w/v) perchloric acid in 2-propanol was added. Absorbance was measured at 570 nm after 20 min incubation at 60 °C. Hydroxyproline (Merck) was used a standard since 13.5% of collagen is composed of Hydroxyproline [48 (link)]. DNA content of digests was measured using a Quant-iT PicoGreen dsDNA assay (Invitrogen) and was used to normalize collagen and GAG content.
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4

Biochemical Analyses of Fibrin Constructs

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Biochemical analyses were performed on fibrin constructs cultured for assessment of ECM formation and the functionalized CMIs®. After culturing, the fibrin constructs and functionalized CMIs® were digested at 60°C overnight in papain buffer (250 µg/ml papain (Sigma‐Aldrich), 0.2 M Na2EDTA, 0.1 M NaAc, and 0.01 M cysteine). The PicoGreen® dsDNA quantitation assay was used according to the manufacturer's instructions to determine the DNA content of the constructs. Excitation was set at 480 nm, emission 520 nm, and λDNA was used as a standard reference. Glycosaminoglycan (GAG) content was determined using dimethylmethylene blue (DMMB) assay. Chondroitin sulfate (Sigma‐Aldrich) was used as standard and absorbance measured at 525 and 595 nm.
papain samples were both freeze‐dried and hydrolyzed overnight at 108°C for determining collagen content using a hydroxyproline assay. Chloramine‐T (Merck) and dimethylaminobenzoaldehyde (Merck 3058) were added, and hydroxyproline (Merck 104506.0010) was used as standard to measure the hydroxyproline content at 570 nm. Collagen content was calculated from the hydroxyproline content, since 13.5% of collagen is composed of hydroxyproline (Neuman & Logan, 1950 ).
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5

Quantification of GAG, DNA, and Collagen

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After an overnight digestion of the samples in papain buffer [250 μg/mL papain (Sigma-Aldrich), 0.2 M NaH 2 PO 4 , 0.1 M EDTA, 0.01 M cysteine] at 60 °C, GAG content was determined by dimethylmethylene blue (DMMB) assay. Absorption ratio was set at 525 and 595 nm using chondroitin sulphate (Sigma-Aldrich) as a standard for calculating GAG content.
DNA content was determined by Picogreen DNA assay (Invitrogen), according to the manufacturer's instructions. Excitation and emission were set at 480 and 520 nm, respectively, and λDNA was used as a standard reference to calculate DNA content. Freeze-dried papain samples were used to determine collagen content of the constructs by hydroxyproline assay. 100 μL of 1.4 M citric acid (27490; Fluka) was added following overnight hydrolysis of the samples in 100 μL of 4 M NaOH (6498; Merck) at 108 °C. Choramine-T reagent (2426; Merck) and dimethylaminobenzoaldehyde (3058; Merck) were added to the samples and hydroxyproline standard (104506.0010; Merck) was used to measure the absorption at 570 nm. As 13.5 % of collagen is composed of hydroxyproline, the amount of collagen was calculated from the hydroxyproline content (Neuman and Logan, 1950) .
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