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Xf dmem medium

Manufactured by Agilent Technologies
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XF DMEM medium is a cell culture medium formulated for the Seahorse XF Analyzers. It is designed to support the optimal performance of cells during Seahorse XF metabolic assays.

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27 protocols using xf dmem medium

1

Measuring Cellular Respiration and Glycolysis

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Respiration and glycolytic rates were measured in endothelial cells using a 96-well Seahorse XF96 Extracellular Flux Analyzer. Endothelial cells were plated in XF96 microplates (20,000 cells per well) and incubated overnight. A Seahorse 96-well assay cartridge was placed in a CO2-free incubator with calibration medium overnight. On the day of the assay, cells were incubated with Seahorse XF DMEM Medium, supplemented with 10 mM glucose, 5 mM sodium pyruvate, and 2 mM glutamine, pH = 7.4, and incubated in a CO2-free incubator for 1 h. Oxygen consumption rate (OCR) was measured at baseline and after the addition of respiratory inhibitor FCCP (4μM carbonyl cyanide-4 (trifluoromethoxy) phenylhydrazone, which uncouples oxidative phosphorylation from membrane potential), followed by rotenone (2μM a complex I inhibitor). Extracellular acidification rate (ECAR) was measured at baseline and after the addition of respiratory inhibitor oligomycin A (5μM an ATP synthase inhibitor), followed by rotenone. After each assay was completed, cells were fixed with 4% paraformaldehyde, and the OCR and ECAR signals were normalized to the number of cells in each well, estimated using Hoescht 33342 staining, as well as to the baseline reading at the initial timepoint.
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2

Mitochondrial Stress Test in Hypoxia

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Cells were seeded at a density of 4 × 104 in 96-well Seahorse microplates 15 h before OGD. After OGD, cells were washed twice with Seahorse XF DMEM medium (pH 7.4) and incubated for 45 min in a CO2-free incubator. The Mito Stress Test was then performed according to the manufacturer’s instructions. Briefly, this includes taking basal oxygen consumption measurements and then oxygen consumption measurements on the Seahorse XFe96 Analyzer after serial injections of oligomycin, FCCP, and rotenone/antimycin A.
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3

Mitochondrial Respiration Profiling in iSLK Cells

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iSLK.219 cells were transfected with NS and TBRG4 siRNA for 96 h, then seeded in XF24 microplates at a density of 40000 cells/well and maintained at 37°C in a 5% CO2 incubator for 16 h. Cells were replenished with Seahorse XF DMEM medium containing 10 mM glucose, 2 mM L-glutamine, and 1 mM sodium pyruvate. The oxygen consumption rates (OCRs) were measured using the Seahorse SXF24 Extracellular Flux Analyzer (Agilent) following the standard protocol. The compounds used included 1.5 μM oligomycin, 0.5 μM FCCP, and 1 μM rotenone and antimycin A.
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4

Mitochondrial Stress Response in Macrophages

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RAW 264.7 (R0 and RMA) cells were seeded in Seahorse XF24 cell culture microplates (75 × 103 cells/well) in growth medium (DMEM with high glucose and 10% foetal bovine serum). For the twelve-hour treatment, cells were treated with LPS (100 ng/mL) or the vehicle 36 h after seeding. The growth medium was replaced with the assay medium (Seahorse XF DMEM medium supplemented with glucose (10 mM), glutamine (2 mM), and pyruvate (1 mM)) and LPS (100 ng/mL)) or the vehicle 11 h later. Cells were then incubated for an additional 60 min at 37 °C without CO2 before being subjected to the mito stress test. For the four-hour treatment, cells were treated with LPS (100 ng/mL) or the vehicle 48 h after seeding. The growth medium was replaced with an assay medium containing LPS (100 ng/mL) or the vehicle 3 h later. Cells were incubated for an additional 60 min at 37 °C without CO2 prior to the mito stress test. The mito stress test was performed using the Seahorse XFe24 Analyser (Agilent) with oligomycin (1.5 μM), carbonyl cyanide-p-trifluoromethoxyphenylhydrazone (FCCP) (1.5 μM), and rotenone (0.5 μM) + antimycin A (0.5 μM). After analysis in Seahorse, cells were lysed with 0.1% SDS in water, and the protein content was measured using the BCA protein assay. All OCR and ECAR measurements were normalised to the protein content prior to further analysis.
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5

Profiling Cellular Metabolism via Seahorse

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0.5x105 BMDMs were seeded in a 96-well Seahorse plate. Following treatments cells were washed and incubated with Seahorse XF DMEM Medium pH 7.4 media supplemented with 10 mM glucose, 1 mM sodium pyruvate, and 2 mM glutamine. Seahorse extracellular flux analysis measured oxygen consumption rate (OCR) (pmol/min) and extracellular acidification rate (ECAR) (mpH/min). ECAR was converted into proton efflux rate (PER) (pmolH+/min), a more accurate measure of extracellular acidification, by Seahorse software. Addition of mitochondrial stress test compounds (5 µM oligomycin, 10 µM FCCP, 5 µM rotenone/antimycin) and glycolytic rate assay compounds (5 µM rotenone/antimycin a, 5 mM 2-DG) were made to derive different measures of metabolism.
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6

Mitochondrial Respiration in Activated Macrophages

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BMDMs were seeded in Seahorse XF24 cell culture microplates (2.2 × 105 cells/well) in growth medium (DMEM with high glucose and 20% FBS). For the 12-h treatment: 36 h after seeding, cells were treated with LPS (100 ng/mL) or vehicle; 11 h later, growth medium was replaced with assay medium (Seahorse XF DMEM medium supplemented with glucose (10 mM), glutamine (2 mM) and pyruvate (1 mM)) with LPS (100 ng/mL) or vehicle. Cells were incubated for an additional 60 min at 37 °C without CO2 before a mito stress test. For the 4-h treatment: 48 h after seeding, cells were treated with LPS (100 ng/mL) or vehicle; 3 h later, growth medium was replaced with assay medium with LPS (100 ng/mL) or vehicle. Cells were incubated for an additional 60 min at 37 °C without CO2 before a mito stress test. The mito stress test was performed in Seahorse XFe24 Analyzer (Agilent) with oligomycin (1.5 μM), FCCP (1.5 μM) and rotenone (0.5 μM) + antimycin A (0.5 μM). After analysis in Seahorse, cells were lysed with 0.1% SDS in water and analyzed for protein content with BCA protein assay. All OCR and ECAR measurements were normalized to protein content before any further analysis.
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7

Seahorse Mitochondrial Stress Assay

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On the day of the assay, cells were washed twice with seahorse media (Seahorse XF DMEM Medium (pH 7.4) supplemented with 2 mM L-glutamine, 1 mM sodium pyruvate, and 25 mM glucose), before 175 μL fresh seahorse media was added and cells were equilibrated in a non-CO2 incubator at 37 °C for one hour before beginning the assay. The Seahorse mitochondrial stress test assay was used, consisting of consecutive additions of oligomycin (1 μM), FCCP (0.25 μM), and rotenone/antimycin A (1 μM) (concentrations chosen following optimization assays). Rates of oxygen consumption and extracellular acidification were recorded at regular intervals throughout the assay. Parameter calculations were performed using the Seahorse XF Cell Mito Stress Test Report Generator.
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8

Mitochondrial Respiration and Glycolysis Assay

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We used Seahorse extracellular flux (XFe96) analyzer (Agilent technologies, Santa Clara, CA) to measure the oxygen consumption rate (OCR) and extracellular acidification rate (ECAR), which are measurements of mitochondrial respiration and glycolysis. MSCs were seeded at 10,000 cells/well of XFe96 seahorse culture plates. After 24 hours, cells were rinsed and switched into Seahorse Base Medium (XF DMEM medium, #103575, Agilent technologies). For mitostress test, the medium was supplemented with 10mM glucose and 1mM pyruvate to maintain cells’ viability. Glycolysis, glycolytic capacity and glycolytic reserve were measured after sequential injection of 5mM glucose, 1μM oligomycin and 50mM 2-DG, in Seahorse Base Medium. All calculations were performed according to the manufacturer protocol using the measurement values.
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9

Mitochondrial Respiration and Glycolysis Assay

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We used Seahorse extracellular flux (XFe96) analyzer (Agilent technologies, Santa Clara, CA) to measure the oxygen consumption rate (OCR) and extracellular acidification rate (ECAR), which are measurements of mitochondrial respiration and glycolysis. MSCs were seeded at 10,000 cells/well of XFe96 seahorse culture plates. After 24 hours, cells were rinsed and switched into Seahorse Base Medium (XF DMEM medium, #103575, Agilent technologies). For mitostress test, the medium was supplemented with 10mM glucose and 1mM pyruvate to maintain cells’ viability. Glycolysis, glycolytic capacity and glycolytic reserve were measured after sequential injection of 5mM glucose, 1μM oligomycin and 50mM 2-DG, in Seahorse Base Medium. All calculations were performed according to the manufacturer protocol using the measurement values.
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10

Quantifying Tumor Cell Fatty Acid Oxidation

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Fatty acid oxidation of tumor cells pre-cultured with neutrophils were determined through real-time measurement of the oxygen consumption rate (OCR) using the Seahorse XFe96 Analyzer (Agilent Technologies), according to the manufacturer’s instructions for the XF Fatty Acid Oxidation Assay. Briefly, FACS-isolated tumor cells were seeded into XFp 96-well microplate wells at a density of 30,000 cells per well and spun for 5 min at 1400 rpm to settle cells. The cells were maintained in XF assay media (XF DMEM medium (Agilent Technologies) supplemented with 1 mM pyruvate, 2 mM glutamine and 10 mM glucose) in a CO2-free 37 °C incubator for 30 minutes to 1 hour. Fifteen minutes prior to plate loading, etomoxir (or vehicle) was added to cells to a final concentration of 20 μM.
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