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C6 nbd ceramide

Manufactured by Merck Group
Sourced in Switzerland

C6-NBD-ceramide is a fluorescent lipid analogue that can be used to study the localization and trafficking of ceramide in biological systems. It consists of a 6-carbon fatty acid chain with a nitrobenzoxadiazole (NBD) fluorescent label attached. C6-NBD-ceramide is commonly used as a tool in cell biology research to visualize the distribution and dynamics of ceramide within cells.

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4 protocols using c6 nbd ceramide

1

Detailed Ceramide Signaling Pathway Protocol

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C6-NBD-ceramide, NVP-231, LY-294002, KICqStart®SYBR®Green qPCR ReadyMix™ (SYBRgreen), hCerK MISSIONR shRNA glycerol stocks, and the anti-β-actin (clone AC-15) antibody were from Sigma-Aldrich Chemie GmbH (Buchs, Switzerland). U-0126 was from InvivoGen (Nunningen, Switzerland). Y-27632 was from Tocris (Zug, Switzerland). Fluorescently-labeled Odyssee IRdye 800CW secondary antibodies were from LI-COR Biosciences (Bad Homburg, Germany). Primers for qPCR were from Eurofins Genomics Germany GmbH (Ebersberg, Germany). The First Strand DNA Synthesis Kit was from ThermoFisher Scientific (Zug, Switzerland) and RNAsolv® from VWR International AG (Dietikon, Switzerland). Antibodies against phospho-Ser473-Akt and total Akt were from Cell Signaling/BioConcept (Allschwil, Switzerland).
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2

Fluorescent Labeling for Organelle Imaging

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Rhodamine 123, C6-NBD-ceramide, nocodazole, taxol, and the calcium ionophore A23187 were all obtained from Sigma-Aldrich. Stable isotope 44Ca enriched to 98.78% was from Oak Ridge National Laboratory.
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3

Analysis of NBD-Sphingomyelin Synthesis

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Macrophages were pretreated with 0, 0.33, 1.1, 3.3, 11, 33, 100 μM YE2. After 2 h, 2 μg/ml C6-NBD-ceramide (Sigma–Aldrich) was added. The supernatant was collected, and a solution of chloroform:methanol (volume ratio 2:1) was added for lipid extraction 2 h later. Then, the solution was centrifuged at 10,000 rpm for 10 min, and the lower organic phase was collected, dried with N2, and reconstituted in 30 μL chloroform. Finally, the product NBD-SM was separated by TLC using CHCL3:CH3OH:NH3·H2O, 16:4:1 (v/v/v) as the developing solvent. The bands were observed through UV light detection (Ding and Jiang, 2014 (link)).
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4

Quantification of Sphingolipid Activities in Melanoma Cells

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1 × 106 melanoma cells were incubated with 2.5 μM C6-NBD-ceramide (Sigma) solubilized in ethanol and SMS and GCS activities were measured as previously described (Lafont et al., 2010 (link); Bilal et al., 2017a (link)).
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