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Gemini nx column

Manufactured by Phenomenex
Sourced in United States

The Gemini-NX column is a high-performance liquid chromatography (HPLC) column designed for a wide range of analytical applications. It features a proprietary stationary phase that provides excellent separation and resolution of analytes. The Gemini-NX column is available in various dimensions and particle sizes to accommodate different sample types and flow rate requirements.

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7 protocols using gemini nx column

1

High-pH Reversed-Phase Chromatography of iTRAQ-Labeled Peptides

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The Shimadzu LC‐20AB HPLC Pump System was used for high‐pH reversed‐phase chromatography. The iTRAQ‐labeled peptide mixtures were reconstituted in 0.5 mL Buffer A (20 mm ammonium formate and 2% ACN, pH 10) and loaded onto a Gemini‐NX column (5 μm, C18, 110 Å, 250 × 4.6 mm; Phenomenex, Guangzhou, China). The peptides were eluted with Buffer A for 10 min and then with 5–30% Buffer B (20 mm ammonium formate and 98% ACN, pH 10) for 15 min. The column was then treated with 30–80% Buffer B for 3 min. All flow rates were 1 mL·min−1.
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2

Pyrazole-Bearing Benzoxazole Sulfonamide Synthesis

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Example 97

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To a solution of 5-cyclopropyl-N-[(3,5-dimethoxyphenyl)methyl]-2-methoxy-N-{4-methoxy-6-[(1H-pyrazol-1-yl)methyl]-1,2-benzoxazol-3-yl}benzene-1-sulfonamide (J-3) (100 mg, 0.165 mmol) in DCM (2.0 mL) was added TFA (2.0 mL). The mixture was stirred for 1 h and then concentrated to dryness. The residue was purified by flash chromatography (12 g SiO2, 1:10 MeOH/EtOAc). The material was repurified by preparative HPLC with a Phenomenex Gemini-NX column (150×30 mm, 5 m particle size), which was eluted with 2-42% MeCN/H2O (+0.05% NH4OH) with a flow rate of 30 mL/min to provide 5-cyclopropyl-2-methoxy-N-{4-methoxy-6-[(1H-pyrazol-1-yl)methyl]-1,2-benzoxazol-3-yl}benzene-1-sulfonamide (Example 97) (50 mg, 67% yield) as a white solid. 1H NMR (400 MHz, DMSO-d6) δ 10.10 (br s, 1H), 7.88 (d, J=1.9 Hz, 1H), 7.51 (dd, J=1.6, 11.0 Hz, 2H), 7.27 (br. d, J=6.8 Hz, 1H), 7.05 (br. d, J=8.9 Hz, 1H), 6.82 (br. s, 1H), 6.72 (br. s, 1H), 6.30 (t, J=1.9 Hz, 1H), 5.44 (s, 2H), 3.83 (s, 2H), 3.90 (br. d, J=8.3 Hz, 1H), 3.73 (s, 2H), 3.76-3.67 (m, 1H), 2.01-1.89 (m, 1H), 1.04-0.78 (m, 2H), 0.70-0.42 (m, 2H). m/z (ESI+) 454.8 (M+H)+.

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3

Determination of Amino Acid Composition

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After adding 6 ml of 1:1 hydrochloric acid to the 0.05 g sample, continue to add 3–4 drops of phenol, freeze for 3–5 min, repeat vacuum‐filling with nitrogen 3 times, and hydrolyze for 22 hr. Open the hydrolysis tube, filter the acid hydrolyzate into a 50‐ml beaker, evaporate it in a water bath, and dilute to 2.0 ml with 20 mmol/L hydrochloric acid. Take 0.5 ml of the hydrolyzed solution into a 10‐ml volumetric flask, add 1 ml of 0.5 M Na2CO3 solution, and add 1 ml of 0.1% 2,4‐dinitrofluorobenzene 60°C water bath to derive for 1 hr, and use 0.1 M KH2PO4 to make the volume to 10 ml. To be tested after filtration with 0.45 μm inorganic membrane. The amino acid analysis was performed on a Waters 1525 Series HPLC system (Waters Corp., USA) equipped with a binary gradient pump and a VWD detector. The separation was carried out at 37°C using a Phenomenex Gemini‐NX column (250 × 4.6 mm, 5 μm). Mobile phase A was acetonitrile/H2O (50:50, v/v), and mobile phase B was 0.05 mol/L sodium acetate solution (6.80 g sodium acetate trihydrate was dissolved in 900 ml water, adjust the pH to 4.0–5.0 with glacial acetic acid, and dilute to 1,000 ml with water), gradient elution for 45 min. The flow rate of 1 ml/min, the injection volume was 10 μl, and the detection wavelength was 360 nm.
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4

Proteome Analysis via FASP Enzymolysis

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The samples were weighted at 300 μg for filter aided sample preparation enzymolysis, and this procession was strictly in accordance with the protocol of universal sample preparation method for proteome analysis18 (link). The filtrates were collected, and the peptides of the samples were quantitated by measuring optical density at 280 nm. 100 μg of the samples were labeled with Tandem Mass Tag (TMT) 6plex Isobaric Label Reagent Set (Thermo Scientific, Rockford, IL, USA). In both KBD and OA groups, 9 samples have been pooled into 3 samples, each with 3 patients, and 6 samples was acquired finally. The total 6 mixed samples were subjected to High-pH Reversed-Phase Fractionation in 1100 Series HPLC Value System (Agilent Technologies, Waldbronn, Germany) equipped with a Gemini-NX column (00F-4453-E0, 4.6 × 150 mm, 3 μm, 110 Å, Phenomenex, Torrance, CA, USA), which was eluted at a flow rate of 0.8 ml/minute. The whole elution process was monitored by measuring the absorbance at 214 nm, and fractions were collected every 1.25 minutes. Finally, the collected fractions (approximately 40) were combined into ten fractions. Each fraction was concentrated by vacuum centrifugation and reconstituted in 40 μl of 0.1% v/v trifluoroacetic acid. The samples collected were stored at −80 °C.
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5

Analytical Characterization of Organic Compounds

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Melting points (m.p.) were determined using a Mettler Toledo MP50 system and were uncorrected. 1H and 13C NMR spectra were recorded in CDCl3 and/or DMSO-d6 using a Bruker AC 300 (1H) or 75 MHz (13C) instruments, except for compounds 1, 2, 4, 6, and 7: 13C-NMR analyses were conducted with a Bruker AVANCE500 at 298 K (125.75 MHz). Chemical shifts are given in δ parts per million (ppm) and referenced to external TMS.
Automated syntheses were carried out on an Accelerator SLT-106 workstation from Chemspeed and microwave assisted reactions on a SWave workstation from Chemspeed equipped with a Biotage Initiator reactor.
High-resolution mass spectra (MS) were recorded on a GCT Premier Mass Spectrometer (Waters, MA, USA). Liquid Chromatography/Mass Spectrometry (LC/MS) analyses were performed on an Autopurif system from Waters (PDA 2996, MS 3100, Pump 2545, MA, USA) with a Gemini-NX column (5, C18, 110A, 50 × 4.6 mm) from Phenomenex. Analyses were done with 1 mL/min flow and a gradient of water/acetonitrile containing 0.05% of formic acid (0.0 to 1.0 min: 90/10; 1.0 to 5.0 min: 90/10 to 0/100; 5.0 to 6.5 min: 0/100; 6.5 to 7.0 min: 0/100 to 90/10; 7.0 to 12.0: 90/10) and purities were determined at 254 nm.
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6

Peptide Separation by SCX-HPLC

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The mixed sample was added to SCX buffer A (20 mM ammonium formate, pH 10.0) and mixed well. After centrifugation at 11000 × g and 4°C for 5 minutes, iTRAQ-labeled peptides were separated by HPLC 2010A system (Shimadzu Corporation) and Gemini NX column (4.6 × 250 mm, 5 μm, 110 Å, Phenomenex, PN:00G-4454-E0). The linear gradient elution of 0-20% SCX buffer A containing 20 mM ammonium formate for 60 minutes was followed by gradient elution of 20-100% SCX buffer B containing 80% acetonitrile for 60 minutes (the flow rate was 0.8 ml/min at 25°C). The fractions were collected at 1 minute intervals and lyophilized in vacuum.
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7

LC-MS/MS Determination of SAP Levels

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In order to determine SAP levels, LC MS/MS analysis was performed as described by Augustin et al. (2012) using an Agilent 1100 Series LC device (Agilent Technologies, Inc., USA), equipped with a Gemini NX column, 150 mm length and 3.5 mm diameter (Phenomen ex, Torrance, USA) operated at 35 °C and coupled to a Bruker HCT Ultra ion trap mass spectrometer (Bruker Daltonics). The samples (0.1 mL each) were transferred into glass vials and diluted to 1.5 mL with 85% methanol for LC MS analysis. The mobile phases consisted of two eluents: water with 0.1% (v/v) formic acid (A), and acetonitrile with 0.1% (v/v) formic acid (B). The gradient was programmed as follows: 0 1 min, isocratic 12% B; 1 33 min, linear gradient 12% 80% B; 33 35 min, linear gradient 80% 99% B; 35 38 min, isocratic 99% B; 38 45 min, isocratic 12% B at a constant flow rate of 0.2 mL min -1 . The Bruker HCT Ultra ion trap mass spectrometer (Bruker Daltonics) was operated using electrospray ionization and m/z ions were detected in a negative mode using tandem mass spectrometry. Qualitative analysis and visualization of LC MS/MS data were performed using the DataAnalysis 4.0 (Bruker Daltonics) software.
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