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Agilent 6100 lc ms spectrometer

Manufactured by Agilent Technologies
Sourced in United States

The Agilent 6100 LC/MS spectrometer is a liquid chromatography-mass spectrometry (LC/MS) system designed for qualitative and quantitative analysis of a wide range of compounds. It combines a liquid chromatography system with a single quadrupole mass spectrometer to provide high-performance separation and detection capabilities.

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2 protocols using agilent 6100 lc ms spectrometer

1

Synthesis and Purification of ACKR3 Peptides

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Phenylephrine (PE), Phentolamine, 5′‐Methylurapidil, Cyclazosin and BMY 7378 were purchased from Sigma Aldrich, CXCL11 and CXCL12 were from Protein Foundry and TC14012 was from Tocris Biosciences. The peptide analogs of transmembrane (TM) 2 (TM2; YILNLAIADLWVVLTIPVWVVDDD), TM4 (VVCILWLLAFCVSLPDTYYLDD), and TM7 (DDDLHVTQCLSLVHCCVNPVLYSFIN) of ACKR3 were generated using the Fmoc protected amino acids in a solid‐phase synthesis on a 433A Applied Biosciences Peptide Synthesizer and Liberty Blue Microwave peptide synthesizer (CEM Corporation) using Fmoc chemistry. The peptides were cleaved from the resin and deprotected with a mixture of 90.0% (v/v) trifluoroacetic acid (TFA) with 2.5% water, 2.5% triisopropyl‐silane, 2.5% 2,2′‐(ethylenedioxy) diethanethiol and 5% thioanisol. Peptides were purified on a preparative (25×250 mm) Atlantis C3 reverse phase column (Agilent Technologies) in a 90 minutes gradient of 0.1% (v/v) trifluoroacetic acid in water and 0.1% trifluoroacetic acid in acetonitrile, with a 10 mL/min flow rate. The fractions containing peptides were analyzed on Agilent 6100 LC/MS spectrometer (Agilent Technologies) with the use of a Zorbax 300SB‐C3 PoroShell column and a gradient of 5% acetic acid in water and acetonitrile. Fractions that were more than 95% pure were combined and freeze dried.
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2

Peptide Synthesis and Purification of CXCR4 Transmembrane Domains

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Phenylephrine was purchased from Sigma-Aldrich (St. Louis, MO, USA) and CXCL12 from Protein Foundry, Milwaukee, WI, USA. siRNA reagents were purchased from GE Dharmacon (Lafayette, CO, USA). The peptide analogs of transmembrane helix 2 (TM2) (LLFVITLPFWAVDAVANWYFGNDD-NH2) and TM4 (VYVGVWIPALLLTIPDFIFANDD-OH) of CXCR4 were generated using the Fmoc protected amino acids in a solid-phase synthesis on a 433A Applied Biosciences Peptide Synthesizer and Liberty Blue Microwave peptide synthesizer (CEM Corporation, Charlotte, NC, USA) using Fmoc chemistry. The peptides were cleaved from the resin and deprotected with a mixture of 90.0% (v/v) trifluoroacetic acid (TFA) with 2.5% water, 2.5% triisopropyl-silane, 2.5% 2,2′-(ethylenedioxy)diethanethiol and 5% thioanisol. Peptides were purified on a preparative (25 mm × 250 mm) Atlantis C3 reverse phase column (Agilent Technologies, Santa Clara, CA, USA) in a 90 min gradient of 0.1% (v/v) trifluoroacetic acid in water and 0.1% trifluoroacetic acid in acetonitrile, with a 10 mL/min flow rate. The fractions containing peptides were analyzed on Agilent 6100 LC/MS spectrometer (Agilent Technologies, Santa Clara, CA, USA) with the use of a Zorbax 300SB-C3 PoroShell column and a gradient of 5% acetic acid in water and acetonitrile. Fractions that were more than 95% pure were combined and freeze dried.
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