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16 protocols using l 80xp

1

Exosome Isolation and Purification

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The UC method was used as previously described (5 (link)). The supernatant was ultracentrifuged using a W32Ti rotor (L-80XP; Beckman Coulter, Brea, CA, USA) at 110,000 × g for 70 min to pellet the exosomes. The pellet was washed in phosphate-buffered saline (PBS) to eliminate contaminating proteins, and centrifuged again at 110,000 × g for 70 min. The PBS was removed and the exosomes re-suspended in 100 µl PBS or nuclease-free water. The nanomaterial exosome isolation methods tested comprised four kits (ExoQuick-TC, TEI for CCM, ExoQuick, TEI for serum), which were used according to the manufacturer's instructions. All centrifugation steps were performed at 4°C.
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2

Isolation and Purification of Bacterial OMVs

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OMVs were isolated from bacterial culture medium by gradient centrifugation. When bacteria were in logarithmic growth period, 250 mL culture medium was centrifuged at 4000 g for 15 min to remove Salmonella and then the supernatant was filtered through 0.45 μm pore size filters. Afterwards, the filtrate was concentrated by centrifugal filters (100 kDa, Millipore, USA). The product was further concentrated by ultracentrifugation (L-80XP, Beckman, USA) at 150,000 g for 2 h at 4 °C. For purification, the product was resuspended in PBS solution and layered over a sucrose gradient, followed by separation at 45000 rpm at 4 °C for 1 h. Finally, OMVs were stored at −80 °C for further experiments.
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3

Isolation and Characterization of Exosomes from ASCs

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The supernatant from 3‒4 × 106 ASCs was ultracentrifuged using a W32Ti rotor (L-80XP; Beckman Coulter, Brea, CA, USA) at 100,000 × g for 70 min to pellet the exosomes. EVs were observed using a JEM-1400 electron microscope (JEOL, Tokyo, Japan). For the treatment of nephritis rats, EVs from 3‒4 × 106 ASCs were administrated intravenously on days 0, 2, and 4. Protein content was evaluated using Pierce BCA Protein Assay Kits (Thermo Fisher Scientific, MA, USA, 23225). The yield of EVs from 3‒4 × 106 ASCs was 318.7 ± 50.6 μg.
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4

Exosome Isolation from Leukemia Cells

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The myeloid leukemia cell lines were cultured in serum-free RPMI-1640 medium and 2% Exo-FBS™ exosome-depleted fetal bovine serum (System Biosciences, Palo Alto, CA, USA) for 48 h, and the cell culture medium (CCM) was collected and centrifuged at 300× g for 10 min. EVs were isolated using an exoEasy Maxi Kit (Qiagen, Antwerpen, Belgium). The supernatant was ultracentrifuged using a W32Ti rotor (L-80XP; Beckman Coulter, Brea, CA, USA). PBS was removed, and the EVs were resuspended in 100 µL of PBS. All centrifugation steps were performed at 4 °C. Vesicle suspensions with concentrations between 107/mL and 109/mL were examined using a NanoSight NS300 (NanoSight Ltd., Amesbury, UK) equipped with a 405 nm laser to determine the size and quantity of the isolated particles. A 60-s video was taken with a frame rate of 30 frames/s, and particle movement was analyzed using nanoparticle tracking analysis (NTA) software (version 2.3; NanoSight Ltd.). RNA was extracted from EVs using a Total Exosome RNA and protein isolation kit (Invitrogen, Merelbeke, Belgium; Cat No. 4478545).
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5

Extraction of Myofibrillar Proteins from Ground Meat

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The MP was extracted by the method as reported by Zhao et al. (2022) . Briefly, the ground meat (100 g) were homogenized with 4 times volume (w/v) of isolation buffer (0.1 M NaCl, 2 mM MgCl2, 1 mM (EGTA), 10 mM KH2PO4/K2HPO4, pH 7.0) by a homogenizer (T25, IKA, Germany) at 10000 × g for 1 min. Then, the mixtures were centrifuged (1500 ×g, 4 °C) for 0.5 h and the precipitates were harvested. Subsequently, the precipitates were resuspended with 0.1 mol/L NaCl solution at a solid-liquid ratio of 1:4 (g/mL) and then centrifuged (150,000 ×g, 4 °C) for 0.5 h (L-80-XP, Beckman, USA). The harvested precipitates were crude MPs and stored at 4 °C until further analysis (within 48 h). PIPES buffer (15 mM, 0.3 M NaCl) containing 0, 20, 40, 60, 80, and 100 mM CaCl2, was used for diluting the MP suspensions, respectively.
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6

Protein Solubility Measurement Protocol

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The MP suspensions were diluted to 5 mg/mL by PIPES buffer (15 mM, pH 6.25) and centrifuged at 8000 ×g for 20 min (L-80-XP, Beckman, USA) and the solubility was measured using the Coomassie brilliant blue method for evaluating the protein content (Wang, Xia, Zhou, Wang, et al., 2020b ). The solubility was defined as follows: Solubility%=Protein content of supernatant5mg/mL×100%
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7

Extracellular Vesicle Isolation Protocol

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The bacterial culture medium preprocessed by centrifugation and filtration was loaded into ultracentrifuge tubes and centrifuged at 160,000 × g for 2h at 4°C (rotor 70Ti, L-80XP, Beckman Coulter, Germany) to obtain vesicle-rich pellets. Then the pellets were resuspended in phosphate buffer saline (PBS) and centrifuged at 160,000 × g for 2h at 4°C. Finally, the pellets were resuspended in a minimal volume of PBS and stored at −80°C until use.
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8

Isolation and Characterization of Rat Liver Microsomes

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Rat liver microsomes were obtained via differential centrifugation [22 (link)] (L-80XP, Microfuge® 16, Beckman Coulter Inc., Miami, FL, USA). The microsomes were stored in buffer [10 mM Tris-acetate, 1 mM ethylenediaminetetraacetic acid (EDTA), 100 mM PMSF, and 20% glycerol, pH: 7.4] at −80 °C until further use. Protein concentrations were determined by the BCA method and CYP450 content was determined by the method of Omura and Sato [23 (link)].
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9

Exosome Purification from HCC Plasma

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Exosomes were purified from the plasma of patients with HCC by ultracentrifugation. The plasma was thawed on ice and centrifuged at 500 × g for 10 min and the supernatant was collected. The following steps were completed continuously and without interruption as soon as possible. The supernatant was ultracentrifuged using a W32Ti rotor (L-80XP; Beckman Coulter, Inc.) at 16,800 × g for 30 min to pellet the exosomes. Subsequently, the pellet was washed in PBS to eliminate contaminating proteins, and centrifuged again at 110,000 × g for 70 min. PBS was subsequently removed and the exosomes were re-suspended in 100 µl PBS. All centrifugation steps were performed at 4°C. All samples were stored in a −80°C ultra-low temperature refrigerator until use (within 1 month).
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10

Exosome Isolation from HEK293T Cells

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Prior to cell culture, DMEM containing 20% FBS was centrifuged at 120,000 g for 2 h to deplete serum exosomes. HKT293T cells, used for exosome production, were cultured in 30 ml 5% exosome-depleted FBS in a 150 mm dish and maintained in 5% CO2 at 37°C for 48 h. Exosomes were isolated from the 30 mL harvested supernatant according to a previous report 21 . Briefly, the supernatant was centrifuged at 300 g for 10 min, 1200 g for 20 min, and 10,000 g for 30 min at 4°C to remove cells and cellular debris and then filtered through a 0.22 μm filter (Millipore, Billerica, MA, USA). The filtrate was centrifuged at 110,000 g for 120 min at 4°C in a Type Ti70 rotor, using an L-80XP ultracentrifuge (Beckman Coulter, Brea, CA, USA). The exosome pellet was resuspended in PBS and ultracentrifuged again at 110,000 g for 120 min 22 . The pelleted exosomes were resuspended in PBS and analyzed using a Micro BCA Protein Assay kit (Pierce, Rockford, IL, USA) or by western blotting analysis of exosomal markers using antibodies specific for Alix, Tsg101, and endoplasmic reticulum marker GM130 (Proteintech, Wuhan, China).
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