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Proteoextract

Manufactured by Merck Group
Sourced in United States, Germany

ProteoExtract is a laboratory equipment product used for the extraction and purification of proteins from biological samples. It utilizes a proprietary extraction process to isolate proteins while preserving their native structure and function. The core function of ProteoExtract is to provide researchers with a reliable and efficient tool for protein sample preparation.

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5 protocols using proteoextract

1

Evaluating Anti-FBS Antibody Cytotoxicity

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To confirm that cell death in the microcytotoxicity assays was anti-FBS antibody mediated, immunoglobulins were depleted from serum collected from FBS-MSC recipients on day 35 as previously described (32 (link)). Briefly, a commercially available kit with a Protein A column (ProteoExtract®, Merck KGaA) was used followed by manual depletion with Sepharose G beads (Millipore Sigma). One hundred μl of serum was diluted in 900 μl of 1x binding buffer. Samples were passed through the Protein A column to remove IgG, in a dropwise manner resulting in partial IgG removal. Two hundred μl of preconditioned Sepharose G beads was added to 300 μl of undiluted eluate and incubated for 1 h with gentle mixing for complete IgG removal. Microcytotoxicity assays were repeated with undiluted serum, serum diluted in 1x binding buffer, partial immunoglobulin depleted serum, or complete immunoglobulin depleted serum. Assays were completed in duplicate, with donor MSCs cultured in either BMS or FBS.
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2

Analysis of XPO1-p53 Interaction by Western Blot

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Western blot analysis was performed as described previously (24 (link)). The following antibodies were used: mouse monoclonal anti-p53 (DO-1; Santa Cruz Biotechnology, Santa Cruz, CA, USA); rabbit polyclonal anti-XPO1 (Santa Cruz Biotechnology); rabbit polyclonal anti-HSP-90a/b (Santa Cruz Biotechnology); rabbit monoclonal histone H3 (Cell Signaling Technologies, Beverly, MA, USA); rabbit monoclonal GAPDH (Cell Signaling Technologies); and mouse monoclonal anti-β-actin (Sigma Chemical Co., St Louis, MO, USA). Nuclear and cytoplasmic proteins were extracted using a subcellular fractionation kit (ProteoExtract; EMD Millipore Corporation, Billerica, MA, USA), according to the manufacturer's protocol. Protein lysates were also subjected to immunoprecipitation using anti-XPO1 and immunoprecipitates were subjected to western blot analysis with anti-XPO1 or p53. Visualized blots were analyzed by the MultiGauge 3.1 software (Fujifilm, Tokyo, Japan).
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3

Western Blot Analysis of Protein Localization

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Western blot analysis was carried out as described previously.(24 (link)) The following antibodies were used: mouse monoclonal anti-p53 (DO-1; Santa Cruz Biotechnology, Santa Cruz, CA, USA); rabbit polyclonal anti-XPO1 (Santa Cruz Biotechnology); rabbit polyclonal anti-HSP-90a/b (Santa Cruz Biotechnology); rabbit monoclonal histone H3 (Cell Signaling Technologies, Beverly, MA, USA); rabbit monoclonal GAPDH (Cell Signaling Technologies); and mouse monoclonal anti-β-actin (Sigma Chemical Co., St Louis, MO, USA). Nuclear and cytoplasmic proteins were extracted using a subcellular fractionation kit (ProteoExtract; EMD Millipore, Billerica, MA, USA), according to the manufacturer's protocol. Protein lysates were also subjected to immunoprecipitation using anti-XPO1 and immunoprecipitates were subjected to Western blot analysis with anti-XPO1 or p53. Visualized blots were analyzed by the MultiGauge 3.1 software (Fujifilm, Tokyo, Japan).
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4

Immunoglobulin Depletion for Allograft Assays

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To remove immunoglobulins, a combination of a commercially available IgG removal column utilizing Protein A (ProteoExtract, Merck KGaA, Darmstadt, Germany) and manual depletion with Sepharose G beads (Millipore Sigma) was performed as previously described.35 Serum samples collected on day 35 from 6 MHC mismatched recipients (3, A5a recipients; 3, A3b recipients) were immunoglobulin depleted. Briefly, 100 μL of serum was added to 900 μL of 1× Binding Buffer. The sample was passed through the IgG removal column in a dropwise manner. Three hundred microliter of undiluted eluate was then combined with 200 μL of preconditioned Protein G Sepharose beads and incubated at 20°C for 1 hour with gentle mixing. After 1 hour, the samples were centrifuged at 4000g for 5 minutes and the immunoglobulin depleted supernatant collected. After sample processing, 2 mL of Protein A Elution Buffer was passed through the IgG removal column and collected. Microcytotoxicity assays were repeated as above with respective donor PBLs being combined with recipient serum diluted to a 1:10 dilution with 1× Binding Buffer, recipient immunoglobulin depleted serum, or recipient serum IgG removal column eluate.
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5

Membrane Protein Analysis of Astrocytes

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Astrocytes grown on dishes were washed three times with PBS, and the membrane fraction was isolated using ProteoExtract (Merck Millipore, Darmstadt, Germany). Total protein was determined using the BCA assay. Each sample (30 μg per well) was separated using SDS-PAGE and subsequently transferred onto polyvinylidene difluoride membrane (Merck Millipore, Darmstadt, Germany). The membranes were incubated with mouse CD55-antibody (Acris Antibodies, Herford, Germany) or rabbit CD59-antibody (Proteintech Group, Rosemont, USA) as primary antibodies for 8 h and then with horseradish peroxidase-conjugated anti-mouse or anti-rabbit secondary antibody (DakoCytomation, Glostrup, Denmark). The bands were detected using an enhanced chemiluminescent detection system (ECLPlus; GE healthcare, Tokyo, Japan) with an image analyzer (LAS-3000; Fuji Photo FilmJapan, Kanagawa, Japan).
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