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Optima l 80 xp ultracentrifuge

Manufactured by Beckman Coulter
Sourced in United States

The Optima L-80 XP Ultracentrifuge is a high-performance laboratory equipment designed for separating and analyzing complex biological samples. It utilizes centrifugal force to separate particles, cells, and macromolecules based on their size, shape, and density. The Optima L-80 XP is capable of achieving high speeds and can be used in a variety of applications, including protein purification, DNA and RNA analysis, and subcellular fractionation.

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30 protocols using optima l 80 xp ultracentrifuge

1

Isolation and Characterization of Extracellular Vesicles

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DMEM, supplemented with all nutrients (4.5 g/l glucose, 1000 IU/ml penicillin, 1000 IU/ml streptomycin, 2 mM L-Glutamine) and 20 % (v/v) heat-inactivated FBS, was ultracentifuged at 100,000 g overnight at 4 °C (Beckman-Coulter, Optimatm L-80-XP ultracentrifuge, type 50-2Ti rotor) [9 , 26 ]. The supernatant was filtered through a 0.22 um filter and diluted with serum-free DMEM to reach the final serum concentration (Additional file 1: Table S1). The pellets from a single sample were pooled, resuspended in 25 ml of PBS and again centrifuged at 100,000 g for 70 min. The EV pellet was finally resuspended in 100ul PBS. EV protein content was quantified using the Bradford protein assay. A NanoSight (Malvern Instruments, Orsay, France) was employed to measure the size of particles [40 (link)]. The number of particles and their movement were recorded for 1x60s and analyzed using the NS500 software.
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2

Exosome Isolation and Characterization

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Exosomes were purified using differential ultracentrifugation. VH was thawed and mixed in an ultra-clear centrifuge tube (Beckman Coulter No. 344062) with 1.5 mL of phosphate-buffered saline (pH7.4) containing a proteinase inhibitor cocktail. Samples were spun at 2000× g at 4 °C for 30 min and the supernatant was collected. The supernatant was again subjected to ultracentrifugation (Beckman Coulter OptimaTM L-80 XP Ultracentrifuge with rotor SW60 Ti, 4 mL × 6) at 12,000× g at 4 °C for 60 min and the resulted supernatant was collected in a new ultra-clear centrifuge tube and spun at 120,000× g for 120 min at 4 °C. The final pellet (exosomes) was resuspended in 100 μL PBS, pH 7.4, and stored at −80 °C until analysis.
The size, number, and morphology of exosomes were determined by nanoparticle tracking analysis (NTA) (NanoSight, Malvern Instruments Ltd., Malvern, UK) and transmission electron microscopy (TEM). Exosome markers were analyzed by exosome detection antibody array (Exo-Check™, System Biosciences, Palo Alto, CA, USA) per the manufacturer’s instruction.
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3

Purification and Characterization of Extracellular Vesicles from Myoblasts and Myotubes

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Myoblasts were seeded in 75 cm2 flasks (2500 cells/cm2) and grown in DMEM. When at 60% confluence, the medium was changed and myoblasts were incubated in DMEM exosome-depleted medium (DED) for 48 h. After 48 h, the conditioned medium was collected and used for ELV-MB purification. Cells were incubated in DMEM until confluence. At 100% confluence, myoblasts were grown in differentiation medium for one week. Then myotubes were incubated in differentiation medium exosome-depleted for 48 h. The conditioned medium was collected and used for ELV-MT purification.
ELVs were purified from C2C12 myoblast- and myotube-conditioned media as previously described [25] . Briefly, cell debris and organelles were eliminated at 2,000 g for 20 min and at 10,000 g for 30 min. The resulting supernatant was filtered through a 0.22 µm filter, in order to remove large particles or cellular debris (Figure S1). ELVs were pelleted by ultracentrifugation at 100,000 g for 70 min +4°C (Beckman-Coulter, Optimatm L-80-XP ultracentrifuge, type 50-2Ti rotor). The nanovesicle pellet was washed with 25 ml of cold PBS. ELV protein content was quantified using Bradford protein assay. In this study, loaded exosomes are expressed as µg of protein-containing exosomes.
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4

Plasma Lipid Profiling Protocol

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For the determination of plasma concentrations of β-carotene, LDL-and HDL-cholesterol, and triacylglycerols (TAG), blood was collected in tubes containing EDTA (Sarstedt AG & Co, Nuebrecht, Germany) and immediately centrifuged (3000×g, 10 min, 4 °C). From the obtained plasma samples, three aliquots were stored at -80 °C until further analysis and the rest ultracentrifuged to obtain the triacylglycerol-rich fraction (TRF). For the analyses of liver and kidney function markers, plasma and serum were obtained from blood sampled at the 0-and 4-h time points.
The TRF was prepared according to [11] (link). Briefly, plasma (3.5 mL) was transferred to an ultracentrifuge tube and carefully overlaid with 8 mL 1.3% sodium chloride and then ultracentrifuged (Beckman Coulter, Opti-maTM L-80 XP Ultracentrifuge) using a swinging bucket rotor (SW41Ti) at 150,000×g for 1 h at 4 °C. Afterwards, the TRF was isolated by transferring the upper ~ 6 mL by pipette, which was then overlaid with nitrogen gas to minimize oxidation and stored at -80 °C until extraction.
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5

Isolation and Characterization of Extracellular Vesicles

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Medium was collected from hMEC, hLEC, hAEC and hPEC, and centrifuged for 20 min at 1500g to remove cell debris. 10 mL of sterile/filtered phosphatase buffer saline (PBS) was added to the media of each sample placed in ultracentrifugation tubes. Samples were centrifuged for 60 min at 20,000g at 4 °C (OptimaTM L-80 XP Ultracentrifuge Beckman Coulter). The microparticle (MPs) pellet was resuspended in sterile PBS for cell stimulation (~ 200 µL). MPs counting was verified using the Nanosight technology (Nanosight® LM14).
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6

Isolation and Characterization of Mouse Bone Marrow Mesenchymal Stem Cells

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Bone morrow mesenchymal stem cells (BMSCs) were isolated from the bone marrow of mouse femurs as previously described (Boregowda et al., 2016 (link)). BMSCs were identified by using osteogenic, adipogenic, and chondrogenic differentiation media to confirm their multipotent differentiation potential. BMSCs were characterized by flow cytometry after being incubated with antibodies against specific surface antigens, including CD45, CD34, CD11b, CD29, CD90, and Sca-1 (BD Biosciences. San Jose, CA, United States) according to the manufacturer’s recommendations. Final quantification was conducted with a BD FACSAria III flow cytometer (BD Biosciences). Stained BMSCs were analyzed and compared to the corresponding unstained cells. The data were analyzed using flow cytometry data analysis software (FlowJo V10, FlowJo, LLC, Ashland, OR, United States). Exosomes were isolated from BMSCs at passages 3–5 using an OptimaTM L-80XP Ultracentrifuge (Beckman Coulter). Exosome concentrations and diameters were measured using IZON qNano Nanoparticle (Zen-Bio, Inc., Research Triangle Park, North Carolina) analysis. Exosome protein and RNA concentrations were analyzed using a NanoDrop spectrophotometer (Thermo-Fisher Scientific, Waltham, MA, United States). The exosomes were visualized by transmission electron microscopy (TEM).
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7

EV Isolation from MSCs at Flask-Scale

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EV isolation from MSCs at the flask-scale was performed essentially as described previously [10 (link), 26 (link)]. Low passage number [3 (link)–6 (link)] of non-senescent frozen stocks of MSCs from the six human isolates (F_1 to F_6) were expanded in T-75 cm2 plastic flasks and grown to near confluence. The cells were washed with PBS (Hyclone) and replaced with MSC serum-free media (SFM) (StemPro A103332-01, ThermoFisher Scientific, Waltham, MA, USA) at 10 mL/flask. To produce LPS-EVs, MSCs from 3 isolates (F_1-F_3) were primed with LPS as described [10 (link)]. Briefly, MSCs were either unprimed (EVs) or primed with 1.0 ug/mL of E. coli LPS O111:B4 (L4391 Sigma, St Louis, MO, USA) (LPS-EVs) in SFM for 18–24 h. The conditioned media was collected, then centrifuged at a low-speed spin (2000 × g at 4 °C for 20 min) to remove any cell debris, followed by an ultra-centrifugation (UC) step (100,000 g avg at 4 °C for 2 h) of the supernatant using Optima™ L-80XP Ultracentrifuge and SW28 rotor (Beckman Coulter Inc. Indianapolis, IN, USA). EVs or LPS-EVs were re-suspended in 1 ml PBS (Hyclone) per 300 mL of conditioned media, aliquoted, then stored at − 80 °C.
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8

Thermosensitive Liposomal Formulations for CDDP Delivery

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The thermosensitive formulations were prepared by the reverse phase evaporation method [16 (link)]. Liposomes were composed of DPPC:CHOL:SA in lipid molar ratios of 95:2.5:2.5 for a total lipid concentration of 40 mmol L-1. For the preparation of CDDP-loaded liposomes (TSL-CDDP), CDDP solution (2.0 mg/mL) was prepared in 0.9% (w/v) NaCl and added to the lipid film dissolved in ethyl ether. After size calibration, the untrapped CDDP was separated from the liposomes by ultracentrifugation (Optima® L-80XP ultracentrifuge, Beckman Coulter, Brea, CA, USA) at 44,800× g at 10 °C for 30 min. The pellet was reconstituted in 0.9% (w/v) NaCl to obtain the initial volume of the liposomal formulation. TSL and TSL-CDDP were functionalized with 4 kDa HA by electrostatic interaction according to the method described by Ravar and collaborators [17 (link)].
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9

Isolation of Exosomes from Pleural Effusions

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Exosomes were isolated from 120 mL PEs with differential centrifugations as previously described.[29 ] To remove cells and debris, PE supernatants were sequentially centrifuged for 20 minutes at 1200 × g and 30 minutes at 10,000 × g. To remove particles greater than 200 nm, supernatants were filtered through 0.22 μm pore filters and rinsed with PBS using ultracentrifugation (Optima L-80XP Ultracentrifuge, Beckman Coulter, Beckman) for 1 hours at 120,000 × g twice. All the steps were carried out at 4°C. Finally, the pellets were resuspended in PBS and stored at −80°C for further use.
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10

Phase Solubility Analysis of Drug-Cyclodextrin Complexes

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The phase solubility studies were carried out according to Higuchi and Connors [18 ]. Briefly, an excess amount of the drug was added to aqueous solutions containing increasing amounts, 0 to 60% (w/v) of HPβCD or HPγCD. After 24 h under magnetic stirring at 25 °C, the drug suspensions were ultracentrifugated for 1 h at 35,000 rpm (Optima L-80 XP Ultracentrifuge BECKMAN COULTER, Brea, CA, USA). Note that our operating conditions are limited to 24 h according to preliminary studies, showing that 24 h and 72 h did not change the equilibrium. The supernatant was then diluted at 1:50 in the mobile phase and analyzed by HPLC. The experiments were repeated three times for each cyclodextrin derivative.
The apparent stability constant of the drug/cyclodextrin complex (D/CD), assuming that one molecule of drug forms a complex with one molecule of cyclodextrin (K1:1), can be calculated from the slope of the linear phase-solubility profiles and the intrinsic drug solubility in the complexation media [18 ,19 (link)] in the absence of the cyclodextrins as presented in Equation (1):
K1:1=SlopeS0×(1Slope),
The complexation efficiency (CE) can be calculated by applying the following Equation (2), which also refers to the slope of the linear phase-solubility profiles [20 (link)] and intrinsic solubility:
CE=K1:1×S0=Slope(1Slope),
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