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24 protocols using hematoxylin

1

Calvaria Histomorphometric and Immunohistochemical Analysis

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After three-dimensional histomorphometric analysis, the calvaria samples were fixed in 4% paraformaldehyde, decalcified in 10% EDTA, washed in running water, dehydrated, diaphanization, and embedded in paraffin. Tissues were sectioned into 4 μm slices for hematoxylin and eosin (H&E) staining and immunohistochemistry of Dkk3, Runx2, and OCN. Briefly described, the samples underwent treatment in a pressure cooker for 1 min at 125°C in EDTA buffer (pH 8.0) and were then cooked for another 2 min and 30 s at 100°C. The samples were allowed to cool to room temperature before incubation with 3% hydrogen peroxide for 15 min. Subsequently, the sections were incubated overnight at 4°C with primary antibody and then incubated sequentially with secondary antibody and diaminobenzidine for 20, 20, and 10 min, respectively. Finally, the slides were counterstained with hematoxylin (Abcam), dehydrated, and mounted.
For immunofluorescence analysis, tissues were cut into 6 μm sections. Frozen sections were incubated for 14 h at 4°C with primary antibodies for Dkk3, Ki67, and β-catenin and incubated with CY3-conjugated secondary antibodies (ab6939, Abcam, MA, USA) at room temperature for 2 h. Slides were observed under a laser scanning confocal microscope (Leica, Wetzlar, Germany).
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2

Immunohistochemical Analysis of BSP and CGA

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Rabbit anti-human BSP, CGA monoclonal antibody and DAB kits, hematoxylin, and second antibody (horseradish peroxide labeled) are purchased from Abcam, Zhongshan Jinqiao, and Santa Cruz. The tumor tissue is continuously sliced into 4 μm thick slices and baked at 65°C for 2 h. Immunohistochemical PV-9000 two-step detection is performed on 100 tumor samples of the study subjects strictly according to the kit instructions to observe the expression of BSP and CGA.
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3

HMMR Expression in Tumor Tissues

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BC tissues and paracancer tissues were sectioned in paraffin and the sections were dewaxed for anti‐HMMR incubation. After rewarming at 37°C for 50 min and washing with PBS solution twice, the sections were probed with a biotinylated secondary antibody. After washing twice with PBS solution, DAB (Abcam) staining was performed for 3 min, and hematoxylin (Abcam) was redyed for microscopic examination. Ki‐67 protein in tumor tissues was observed.
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4

Intramyocardial Lipid Quantification

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10-μm RV cryosections were stained with 0.5% Oil Red O (Sigma-Aldrich) in propylene glycol overnight and then counterstained with hematoxylin (Abcam) to identify intramyocardial lipid deposits. Sections were imaged with a Zeiss AxioCam IC and percent Oil Red O stain was determined using FIJI.
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5

Histological Analysis of Bone Samples

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After 8 weeks, the mice in each group were sacrificed via i.p. overdosing injection, and the femurs were removed for histological analysis. The femur samples were fixed in 4% paraformaldehyde for 24 h, decalcified in 10% EDTA for 4 weeks, dehydrated, diaphanized, and embedded in paraffin. The processed samples were sectioned into 4 μm slices and stained with H&E (Sigma–Aldrich) following the manufacturer’s instructions.
For immunohistochemistry analysis, TRAP and Itgb1 were used to quantify the number and area of osteoclasts. Briefly, the samples were cooked in a pressure cooker for 3 min and 30 s with antigen retrieval solution, cooled at room temperature (RT), and incubated with 3% hydrogen peroxide for 10 min. The samples were then incubated overnight at 4 °C with primary antibody and then with secondary antibody. According to the manufacturer’s instructions, 3,3-diaminobenzidine tetrahydrochloride chromogenic agent was prepared, and target slides were then incubated with the agent for 5 min. Subsequently, the samples were counterstained with hematoxylin (Abcam), dehydrated, and mounted.
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6

CD206 Immunohistochemistry Protocol

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Immunohistochemistry was performed according to the manufacturer’s instructions. Briefly, paraffin-embedded sections were deparaffinized, hydrated, and antigen retrieved by steaming the slides in sodium citrate buffer (10 mM sodium citrate, pH 6.0). The slides were then treated with 3% H2O2 and blocked using a blocking solution. Primary antibodies were pre-diluted in blocking solution at 1:200 for CD206 (R&D Systems) and applied to tissue sections overnight at 4 °C in a humidified chamber. Biotinylated secondary antibodies were then applied, followed by signal development using liquid DAB substrate (Dako). Sections were counterstained with hematoxylin (Abcam). The slides were scanned using a digital camera Aperio AT2 (Leica). Analysis of immunohistochemistry staining intensity was performed using ImageJ through the IHC profiler plugin.
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7

Alizarin Red S Staining of SMSCs

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SMSCs were cultured at 5 × 105 cells per well in the 24-well plates containing DMEM-10% FBS. SMSCs were washed with PBS, fixed with 10% formaldehyde-calcium solution for 10 min, washed with isopropyl alcohol for 1 min, and stained with ARS (Leagene, Beijing, China) at 37 °C in the dark for 1 min. After decolorization, SMSCs were re-stained with hematoxylin (Abcam) for 1 min, washed with PBS, sealed with glycerin, and viewed under a microscope [14 (link)].
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8

Oil Red O Staining for Lipid Analysis

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For oil red O staining, mouse tissues (with 10% formalin) were incubated with 0.5% oil red O in isopropanol (Sigma) for 20 min, and then counterstained using hematoxylin (Abcam, Cambridge, MA, USA) for 1 min. The triglyceride or cholesterol level from hepatocytes or mouse serum was measured using Triglyceride Assay kit (ab65336) or Cholesterol Assay kit (ab65359; Abcam) following the manufacturer’s instructions.
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9

Immunohistochemical Evaluation of TRIM33 Expression

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First, the paraffin-embedded tissue specimens were sectioned and then subjected to routine deparaffinization and gradient alcohol processing. Then, we used citrate buffer (pH 6.0) for antigen retrieval. Afterward, the specimen on the section was incubated with anti-TRIM33 antibody at 4°C overnight. On the second day, the specimen on the section was incubated with the secondary antibody for 30 minutes in a 37°C incubator, and the DAB kit (Abcam) was used to detect the expression of the target protein and hematoxylin (Abcam) was used to stain the nucleus. Finally, two independent pathologists evaluated and calculated the corresponding H score.
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10

High-Fat Diet Effects on Liver Health in Rats

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For liver panel analyses, blood was collected via cardiac stick from
rats deeply anesthetized with isoflurane at 3 weeks post- ad
lib
or restricted high fat pellet access (n=6 rats/group).
Collection tubes were provided by IDEXX laboratories (Westbrook, ME). Following
collection, blood samples were centrifuged at 2000 x g for 5 mins at
4°C. Serum was transferred to a separate tube and stored at
−80°C until time of shipment. Comprehensive liver panel for
markers of inflammation and damage was performed by IDEXX laboratories.
For histopathological examination of livers, animals fed either
ad lib high fat pellets or restricted high fat pellets were
anesthetized with isoflurane at 3 weeks post-high fat pellet start and perfused
with saline. The right lateral lobe was removed and flash frozen in isopentane.
The samples were cut into 10 μm sections on a cryostat, mounted on glass
slides, and fixed in ice-cold 4% paraformaldehyde for 10 min. The
sections were stained in parallel using hematoxylin (Modified Mayer’s)
for 45 secs or Oil Red O lipid stain for 15 min (Abcam, Cambridge, MA). Images
were acquired with a 20x objective lens using Zeiss Axioskop 2 Plus microscope
(Carl Zeiss Microscopy, Oberkochen, Germany) attached to a Exi Aqua camera
(QImaging, Surrey, BC, Canada) under identical acquisition settings for all
sections (iVision-Mac software, BioVision Technologies, Exton, PA).
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