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Axio observer d1 inverted microscope

Manufactured by Zeiss
Sourced in Germany

The Axio Observer D1 is an inverted microscope designed for routine microscopy tasks. It features a sturdy stand, a high-quality optical system, and a range of illumination options to support various imaging techniques. The microscope is suitable for a variety of applications, but a detailed description of its intended use is not provided to maintain an unbiased and factual approach.

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29 protocols using axio observer d1 inverted microscope

1

Evaluating Endothelial Cell Responses to MSC Conditioned Media

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Conditioned media collected from CV-MSCs with HP or non-HP after ischemic stimulus were centrifuged at 10000 rpm for 10 min to remove floating cells and debris. For survival experiments, human endothelial colony forming cells (HECFCs) were seeded in 96-well plates (20000 cells/cm2) with three independent samples in duplicates and cultured in the conditioned media for 5 days. The media were changed every other day. The viable cell number was determined at different time points using MTS assay. For migration experiments, HECFCs were seeded in Culture-Insert 2 Well in μ-Dish (Cat. No.: 81176, ibidi) with three independent samples in duplicates and cultured in the conditioned media for 12 h. Images were taken using a Carl Zeiss Axio Observer D1 inverted microscope. The cell-covered area was quantified using ImageJ software. For tube formation experiments, HECFCs were seeded in 96-well plates precoated with 50 μL Matrigel (Cat. No.: 354234, Corning) according to the manufacturer's instructions at a density of 104 cells/well with three independent samples in duplicates and cultured in the conditioned media. After 12 h, cells were observed using the Carl Zeiss Axio Observer D1 inverted microscope. The total segment tube length was quantified using ImageJ software.
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2

Immunocytochemistry and Western Blot for Hantavirus

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Cells grown on coverslips were fixed with 3% paraformaldehyde and stained with primary and fluorescently labeled secondary antibodies. The following antibodies were used: mouse anti-α-smooth muscle actin (α-SMA) (clone 1A4, Sigma, Darmstadt, Germany), mouse anti-synaptopodin (clone D-9, Santa Cruz, Santa Cruz, CA, USA), mouse anti-cytokeratin 18 (CK18) (clone RGE-53, Merck Millipore, Darmstadt, Germany), rabbit anti-fibronectin (Sigma), mouse anti-integrin αvβ3 (clone LM609, Millipore), mouse anti-CD31 (Dako, Glostrup, Denmark), and mouse anti-N protein PUUV (A1C5, Progen, Heidelberg, Germany). Cell nuclei were stained by Hoechst 33342 (Invitrogen, Thermo Fisher Scientific, Waltham, MA, USA). Images were taken using an Axiocam 506 mono camera attached to an Axio Observer.D1 inverted microscope (Carl Zeiss, Oberkochen, Germany). For Western blot analysis, the following primary antibodies were used: rabbit anti-PUUV N protein and mouse anti-α-tubulin (Sigma). Loading was verified by the detection of tubulin on the same membrane. Detection was performed by using near infrared fluorescent dye (IRDye)-conjugated secondary antibodies and an Odyssey CLx infrared imaging system (Li-Cor, Lincoln, NE, USA).
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3

Evaluating Gap Junction Permeability

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GJ permeability was evaluated at room temperature (RT) using the scrape loading/dye transfer (SL/DT) technique [93 (link),94 (link)]. Briefly, MCs cultures were washed for 10 min in HEPES-buffered salt solution containing the following (in mM): 140 NaCl, 5.5 KCl, 1.8 CaCl2, 1 MgCl2, 5 glucose, 10 HEPES, pH 7.4, followed by washing in a Ca2+-free HEPES solution for 1 min. Then, a razor blade cut was made in the monolayer in a HEPES-buffered salt solution with normal Ca2+ concentration containing the fluorescent dye Lucifer yellow (LY). After 1 min, LY (100 μM) was washed out several times with HEPES buffered salt solution. At 8 min after scraping, fluorescent images were captured using a Zeiss Axio Observer D.1 Inverted Microscope with a Solid-State Colibri 7 LED illuminator and with a 10× objective. Changes were monitored using an AxioCam MRm monochrome digital camera R3.0 (Carl Zeiss AG, Zeiss, Oberkochen, Germany), and Software ZEN Pro (Zen 2.3 [blue edition], Carl Zeiss AG, Oberkochen, Germany) for image acquisition and analysis. For each trial, data were quantified by measuring fluorescence areas in three representative fields. Quantification of changes in GJ communication induced by different treatments was performed by measuring the fluorescence area, expressed as AU [93 (link),94 (link)].
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4

Anti-Filamentation Compound Screening in C. albicans

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C. albicans SC5314 cells were used to seed a round-bottom microtiter plate containing a combination of compound 9029936 and DTPA (Sigma-Aldrich, St. Louis, MO) in YPD. In a checkerboard manner, serial 2-fold dilutions of compound 9029936 (ranging from 40 to 0.156 µM) and serial 2-fold dilutions of DTPA (ranging from 100 to 1.5 µM) were added to the wells of 96-well round-bottom microtiter plates in combination before seeding with aliquots of a C. albicans SC5314 culture in YPD (100 µl/well of a 1 × 106 cells/ml solution). An appropriate positive control (absence of compound, to allow for uninterrupted filamentation) and negative control (no cells, to monitor contamination) were added. The plates were incubated at 30°C for 6 h to allow for filamentation. Microscopy was performed using DIC on an Axio Observer D1 inverted microscope (Carl Zeiss, Inc., Thornwood, NY) equipped for photography.
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5

Immunofluorescence Staining of Hantavirus Proteins

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For immunofluorescence, cells grown on coverslips were fixed with 3% paraformaldehyde. The following primary antibodies were used for staining: mouse anti-cytokeratin 18 (CK18) (clone RGE-53, Millipore, Burlington, MA, USA), mouse anti-N protein HTNV (B5D9, Progen, Heidelberg, Germany), mouse anti-N protein PUUV (A1C5, Progen) for TULV N protein, and rabbit anti-ZO-1 (Zonula Occludens-1) (Invitrogen, Karlsruhe, Germany). Cell nuclei were stained by Hoechst 33,342 (Invitrogen, Waltham, MA, USA). Images were taken using an Axiocam 506 mono camera attached to an Axio Observer. D1 inverted microscope (Carl Zeiss, Wetzlar, Germany).
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6

Characterizing DSPP Knockout Mouse Bone

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DSPP null mice and their matched wild type mice were bred and head sections collected and used for IHC (immunohistochemical analysis). All mouse care and experimental procedures were approved and conducted in strict accordance with the guidelines and regulations stipulated by the Institutional Animal Care and Use committee at the University of Illinois at Chicago and in compliance with the ARRIVE (Animal Research: Reporting of in Vivo Experiments) guidelines. Formalin fixed paraffin-embedded specimen and paraffin block sectioning were conducted as described previously24 (link). Primary antibodies used were: OCN (ab93876), OSX (sc-393325), PTX3 (sc-373951), and p65 (abcam16502). Sections were developed with VECTASTAIN® ABC HRP kit (Vector Laboratories,) or (M.O.M.™) Elite Peroxidase Kit (Vector Laboratories) as per manufacturer’s instruction. The DAB Peroxidase (HRP) Substrate Kit (Vector Laboratories) was used for antigen detection. Sections were imaged with Carl Zeiss Axio Observer D1 inverted microscope. ImageJ (1.50c) and IHC Profiler plugin was used to quantitate positive staining within area of interests (AOI) and represented as percentages. Data extracted from at least 6 AOIs per sample were used to obtain statistical significance.
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7

Quantifying PDL Attachment and Collagen

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Hemi-mandible sections were stained using 0.2% phosphomolybdic acid (Electron Microscopy Sciences). phosphomolybdic acid was added for 3 min and the slides were subsequently rinsed with water. Sirius Red, 0.1% in saturated picric acid was added to the slides for 90 min, followed by two washes in 0.01 N hydrochloric acid, dehydration, and mounting with Permount (Fisher Chemical Permount Mounting Medium).
Stained sagittal sections were imaged under brightfield light (Nikon Eclipse 80i with Osteomeasure) to quantitate the PDL attachment fraction. The PDL attachment fraction was defined as the total length of acellular cementum along the distal root of the first molar in contact with the PDL, which was subsequently normalized to the total length of the acellular cementum. Slides were also imaged under polarized light to visualize collagen fiber orientation (Carl Zeiss AG Axio Observer D1 Inverted Microscope). Polarized images were then evaluated for PDL fiber length, width and angle using CT-FIRE Matlab extension.52 (link)
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8

Extracellular Vesicle Attachment Assay

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To modify the culture surface with ligands, cell culture wells in a 48-well plates were coated with 150 μL of 20 μg/mL Avidin (Thermo Fisher Scientific) and incubated for 1 h at 37°C. Avidin coated wells were rinsed three times with PBS and were treated with 150 μL molar equivalents (2 μM) of D-biotin (Thermo Fisher Scientific) or LLP2A-bio. After 1 h, the wells were washed three times with PBS and blocked with 1% BSA for 1 h. After the wells were rinsed three times with PBS, for the EV attachment assay, 5 × 106 EVs suspended in PBS was added into each well and incubated for 10 min at 37°C and 5% CO2. Then the wells were washed three times with PBS, and the adhered EVs were imaged using a Carl Zeiss Axio Observer D1 inverted microscope. Quantification of images was performed using the ImageJ software.
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9

Immunohistochemical Analysis of DDB2 in HNSCC

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Human normal and HNSCC tissues were obtained from US Biomax Inc. as paraffin embedded tissue microarray slides (HN811a; and HN242a). Tissues were deparaffinized and rehydrated in descending concentrations of ethanol as described before [40 (link)]. Endogenous peroxidase was quenched with 3% H2O2 for 15 min followed by blocking in normal serum for 1h. The tissues were incubated overnight at 4°C with the anti-DDB2 antibody (ab77765, Abcam) diluted (1:100) in 3% normal serum in a humidified chamber. The tissues were incubated first in biotinylated anti-rabbit antibody and then in ABC reagent using the Vectastain ABC kit PK-4001 as per manufacturer's instructions. The enzymatic reaction was detected by adding DAB substrate for 90 sec. After dehydration in ascending concentration of ethanol, the sections were mounted in permount (Thermo Scientific). The slides were imaged at 10x magnification for Normal tongue, Tumor Stages I–III/IV, and cancer adjacent normal tongue tissue (NAT) using a Zeiss Axio Observer D1 inverted microscope.
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10

Quantifying LRNV Uptake in HUVECs

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HUVECs were grown to
90% confluence in 48-well tissue culture-treated plates. LRNVs were
labeled with DiI or DiD dye (Thermo Fisher Scientific). Dyes were
added to LRNVs at a final concentration of 1.67 μM and incubated
at 37 °C for 10 min. Excess DiI was removed using Nanosep centrifugal
ultrafiltration devices with Omega membranes (100 kDa MWCO, Pall OD100C34).
To control for excess DiI micelles, the same procedure was conducted
with the DiI dye alone with the LRNV sample volume replaced with 1×
PBS instead. 5 × 108 LRNV particles were added to
each well and incubated for 4, 6, or 24 h. At the end of the timepoint,
media was aspirated and replaced with fresh media supplemented with
20 μg/mL Hoechst 33342 (Thermo Fisher Scientific #62249) and
imaged using a Carl Zeiss Axio Observer D1 inverted microscope. Particle
uptake was assessed semiquantitatively using ImageJ. Before analysis,
intensities of the control-DiI group were subtracted from the LRNV
group at each timepoint to account for background. For representative
images, cells were plated in eight-well chamber slides (Labtek), fixed
with formalin for 20 min at room temperature (RT), and stained with
DAPI before being mounted and imaged using a Nikon C2 scanning laser
microscope.
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