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7 protocols using uranyl acetate replacement stain

1

Detailed Tissue Fixation and Embedding

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Specimens were fixed in fixation solution (0.12M PB buffer pH 7.4 containing 1% glutaraldehyde, 1% formaldehyde with 2mM calcium chloride and 2% sucrose) on ice for 1 hour and washed 5 x 3 minutes in cold 0.15M cacodylate buffer (50mM cacodylate, 50mM KCl, 2.5mM MgCl2, 2mM CaCl2 pH 7.4) on ice. After washing for 4 x 5 minutes in 0.15M cacodylate buffer at RT, specimens were subsequently fixed for 1 hr with 1% osmium tetroxide in 0.15M cacodylate buffer. Specimens were washed 2 x 5 minutes in ddH2O. Afterwards, specimens were incubated for 1 hr in aqueous UAR-EMS (4%, Uranyl Acetate Replacement Stain, Electron Microscopy Sciences, Hatfield, USA), washed 2 x 5 minutes in ddH2O at RT and dehydrated in an ascending ethanol series using solutions of 30%, 50%, 70%, 90%, 96%, and 100% ethanol for 10 minutes each. They were incubated two times in propylene oxide (PO) for 30 minutes each before incubation in a mixture of PO and Epon812 (1:1) overnight. The following day, the Epon-PO mixture was substituted with pure Epon812 and samples were incubated for 2 hours in Epon812. Specimens were embedded in Epon812 and kept at 60°C for 48hrs.
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2

Transmission Electron Microscopy of Filaments

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Filaments were grown in the same manner as for transcriptome profiling and were fixed in 2.5% glutaraldehyde, 4% paraformaldehyde, 0.18 m sucrose, 100 mm sodium phosphate buffer pH 7.0 for 24 h at 4°C followed by post‐fixation in 1% osmium tetroxide at 25°C for 4 h. After washing in 100 mm sodium phosphate buffer, samples were dehydrated in an acetone series for 20–30 min (for each step) before exchange to propylene oxide. Dehydrated samples were embedded in Spurr's resin (Electron Microscopy Sciences, https://www.emsdiasum.com/microscopy/) before sectioning and mounting to grids. Grids were stained with uranyl acetate replacement stain (Electron Microscopy Sciences) and lead citrate before imaging on an FEI/Philips CM100 Biotwin transmission electron microscope (http://www.fei.com/) with a Kodak 4.2i, bottom‐mount digital camera (http://www.kodak.com).
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3

Ultrastructural Analysis of Skeletal Muscle

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To evaluate skeletal muscle fine sub-cellular ultrastructural features, CB1+/+ and CB1−/− skeletal muscle were minced in small pieces and fixed overnight (O.N.) in glutaraldehyde 2.5% (Electron Microscopy Science, Hatfield, PA, USA) in 0.1 M cacodylate buffer (pH 7.4) at 4 °C. Fixed samples were then rinsed with 0.1 M cacodylate buffer for at least 1 h, post-fixed with 1% osmium tetroxide (OsO4) in 0.1 M cacodylate buffer (Electron Microscopy Science, Hatfield, PA, USA), dehydrated in ethanol (Sigma-Aldrich, Milano, Italy, EU), and embedded in epoxy resin (Electron Microscopy Science, Hatfield, PA, USA). Ultrathin sections (60 nm), obtained using an UC6 ultramicrotome (Leica, Wetzlar, Germany, EU) equipped with a diamond knife (DiATOME US, Hatfield, PA, USA), were placed on copper grids (Electron Microscopy Science, Hatfield, PA, USA). Ultrathin sections were then treated with Uranyl Acetate Replacement stain (UAR-Electron Microscopy Science, Hatfield, PA, USA) and contrasted with lead citrate (Sigma-Aldrich, Milano, Italy, EU). Samples were studied using a 100 kV transmission electron microscope EM208S PHILIPS (FEI—Thermo Fisher, Waltham, MA, USA) equipped with the acquisition system Megaview III SIS camera (Olympus/EMSIS) and iTEM3/Radius software, version 2.1.
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4

Conventional Electron Microscopy of Cit-k KO Mice

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For conventional electron microscopy, P14 Cit-k KO and WT mice were perfused transcardially with PB (0.1 M, pH 7.4) followed by 2% PFA and 2% glutaraldehyde in PB, according to ref. 91 (link). Brains were post-fixed overnight at 4 °C in the same fixative. Vibratome sections (200–400 μm thick) were cut, and post-fixed with 1% osmium tetroxide for 1 h at 4 °C, then stained with uranyl acetate replacement stain (Electron Microscopy Sciences, USA). After dehydration in ethanol, samples were cleared in propylene oxide and embedded in Araldite (Fluka, Saint Louis, USA). Semithin sections (1 μm thick) were obtained at the ultramicrotome (Ultracut UCT, Leica, Wetzlar, Germany), stained with 1% toluidine blue and 2% borate in distilled water, and then observed under a light microscope for precise callosal location. Ultrathin sections (70–100 nm) were examined under a transmission electron microscope (JEOL, JEM-1010, Tokyo, Japan) equipped with a Mega-View-III digital camera and a Soft-Imaging-System (SIS, Münster, Germany) for computerized acquisition of the images.
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5

Visualizing Extracellular Vesicle Morphology via TEM

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EV morphology was visualized via transmission electron microscopy (TEM) using a negative staining technique. A portion of each EV sample (10 μl) was fixed in a 1:1 solution using 4% EM-grade paraformaldehyde (Electron Microscopy Sciences, 157-4-100) for 30 min at room temperature. A 10 μl droplet of the EV-PFA mixture was then allowed to adsorb to a carbon-coated copper grid (Electron Microscopy Sciences, CF200-Cu-25) for 20 min. After a brief wash using a of a drop of 1X PBS, the EV-coated grid was then placed on a drop of 1% glutaraldehyde (in 1X PBS) for 5 min. The grid was washed 5-7 times (2 min each wash) on deionized water droplets with blotting on filter paper between washes. The grid was then positioned on a droplet of uranyl-acetate replacement stain (Electron Microscopy Sciences, 22405) and allowed to dry completely for 10 min. Once prepared, the grids were imaged at 200 kV on a JEOL JEM 2100 LaB6 TEM.
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6

Exosome Visualization Protocols

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Exosome pellets were resuspended in 2% paraformaldehyde in phosphate buffer for 30 min and washed in phosphate buffer. The fixed samples were absorbed onto Formvar-coated copper grids for 20 min in a dry environment and fixed in 2% glutaraldehyde for a further 5 min. After rinsing in distilled water, samples were stained with Uranyl Acetate Replacement Stain (Electron Microscopy Sciences) (Washington, PA, USA) for 1 min. Excess liquid was removed from the grid using filter paper, and grids were stored at room temperature until imaging. The average exosomes count was calculated in 10 nonoverlapping fields.
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7

Exosome Fixation and Staining for EM

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Exosome pellets were resuspended in 2% paraformaldehyde in phosphate buffer for 30 min, and washed in phosphate buffer. The fixed samples were absorbed onto formvar-coated copper grids for 20 min in a dry environment and fixed in 2 % glutaraldehyde for further 5 min. After being rinsed in distilled water, samples were stained with Uranyl Acetate Replacement Stain (Electron Microscopy Sciences) for 1 min. Excess liquid was removed from the grid using filter paper, and grids were stored at room temperature until imaging. Imaging was done in a FEI Tecnai electron microscope (FEI).
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