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2 protocols using α1 3 6 galactosidase

1

Glycoprotein Characterization by PGC-LC-MS

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Acetonitrile (ACN), ammonium bicarbonate (NH4HCO3), dithiothreitol (DTT), iodoacetamide, formic acid (FA) and bovine fetuin (Catalog no. F2379) were obtained from Sigma-Aldrich. PNGase F, α1-2,3 mannosidase, α1-3,6 galactosidase and α2-3,6,8 neuraminidase were purchased from New England Biolabs. LacZ β-galactosidase was purchase from Roche Diagnostics. mAbs were obtained from pharmaceutical companies.
Micro PGC column materials were obtained from Mandel Scientific Corporation, and capillary Hypercarb PGC materials (particle size 3 µm, pore size 250 Å) were obtained from Thermo Fisher Scientific. Fused silica capillary tubing was purchased from Polymicro Technologies Inc. Capillary PGC columns were packed in-house as reported previously32 (link).
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2

Decellularization of Osteochondral Plugs

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Cylindrical osteochondral plugs, 5 mm diameter × ~8 mm, were harvested from the femoral condyles and patellofemoral grooves. Cleaning and decellularization was accomplished by incubating plugs in the following solutions (20 plugs in 50 ml of solution per batch):
All steps were carried out under orbital shaking at 37 °C (MaxQ 4000, Thermo Scientific, Marietta, OH), except for steps 1, 8, and 9, which were carried out at room temperature. For the α-Gal immunohistochemistry experiment, some tissue underwent an additional processing step after the SDS treatment. Those plugs were incubated for 4 hours at 37 °C in 25U/ml α1–3,6 galactosidase (New England BioLabs, Ipswich, MA), 50 mM sodium acetate (pH 5.5), 5 mM CaCl2, and 0.01% wt/vol bovine serum albumin (BSA).
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