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13 protocols using smad4

1

Immunohistochemical Analysis of TGF-βR2 and SMAD4

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Immunohistochemistry was performed on formalin fixed paraffin embedded (FFPE) sections. The primary antibodies against TGF-βR2 (Novus Biologicals, LLC, Littleton, CO) and SMAD4 (Proteintech Group, Inc. Chicago, IL) were used at 1∶350 and 1∶450 dilutions, respectively. The antibody complex was detected using the ABC kit (Vector Laboratories, Burlingame, CA). Nuclear and cytoplasm staining was recorded for both markers. The staining intensity was scored as 0 for negative, 1 for weak, 2 for intermediate, and 3 for strong staining. The percentage of cells with positive staining were scored as 0 for none, 1 for 1–50%, and 2 for >50%. The final staining score was the product of the intensity and percentage scores. Each slide was evaluated by two investigators (Drs. Dongfeng Tan and Yanan Li) and consistent data from both evaluators were used in the final statistical analysis.
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2

Adenovirus-Induced Apoptosis Pathway Analysis

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The AF cells were collected at 12, 24, and 48 h after recombinant adenovirus infection. The whole cell lysis was extracted using Cell Lysis Buffer for Western and IP (Beyotime, P0013) added with PMSF (1 : 100) [23 (link)]. The relative protein levels were calculated versus GAPDH. The primary antibodies used in this study were as follows: GAPDH, Bcl-2, Bax, Bcl-XL, Cyt-c, procaspase 9, cleaved-caspase 9, procaspase 3, cleaved-caspase 3, Smad7 (Proteintech, USA, 1 : 1000), Smad4 (Proteintech, USA, 1 : 1000), total-smad2 (Proteintech, USA, 1 : 1000), total-smad3 (Proteintech, USA, 1 : 1000), P-smad2 (CST, USA, 1 : 1000), and P-smad3 (CST, USA, 1 : 1000). Following incubation with a primary antibody, the membranes were washed with TBST and incubated with HRP-conjugated anti-rabbit or anti-goat second antibody. The membranes were then washed thrice, and the immunoreactive bands were visualized using NBT/BCIP as a substrate. Densitometric analysis was done using the NIH ImageJ Software to quantify the protein present in the detected bands. GAPDH content was assayed as standardization of sample loading. Quantitative densitometric values of each protein of interest were normalized to GAPDH.
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3

Captopril's Effects on Cardiac Remodeling

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The ISO was obtained from Sigma-Aldrich (St. Louis, MO, United States). The captopril was purchased from the PURCON Pharmaceutical Factory (Shanghai, China). The creatine kinase (CK), hydroxyproline (HYP), and lactate dehydrogenase (LDH) kits were purchased from Nanjing Jiancheng Bioengineering Institute (Nanjing, China). The creatine kinase-MB (CK-MB), procollagen type I carboxy-terminal peptide (PICP), and type I collagen carboxyl terminal peptide (ICTP) ELISA kits were purchased from Meimian Biotechnology Institute (Shenyang, China). The primary antibodies against Sirt3, Smad2, Smad4, Smad7, GAPDH, Matrix Metalloproteinase (MMP) 2, and MMP9 were purchased from Proteintech Group, Inc. (Wuhan, China). The primary antibodies against TGF-β and Smad3 were purchased from Bioss Co. (Beijing, China). The primary antibody against Tissue Inhibitors of Metalloproteinase (TIMP)-1 was purchased from Shanghai Bowan Biotechnology Co., Ltd. (Shanghai, China).
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4

Western Blot Analysis of Protein Expression

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Cells were lysed in in RIPA Lysis Buffer (Beyotime Biotechnology, China), and the protein concentration was determined by a Pierce™ BCA Protein Assay Kit (Thermo Fisher Scientific, USA). The proteins were separated by 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) for approximately 1.5 h at 90 V-120 V, and then transferred to PVDF membranes (Millipore, USA) at 250 mA for 60 min. After blocked with 5% non-fat milk, the membranes were incubated overnight at 4 °C with specific primary antibodies (FOXM1, 1:200, Santa Cruz Biotechnology, USA; PCDH10, 1:500, Proteintech, China; DACH1, 1:500, Proteintech, China; SMAD4, 1:500, Proteintech, China; β-actin, 1:2000, Proteintech, China). After being washed with TBST (Tris-buffered saline plus Tween-20) three times, the membranes were incubated with corresponding secondary antibodies for 1 h. Bound antibodies were visualized with Li-Cor Odyssey imaging system (Li-COR Biosciences, USA) according to the manufacturer's instructions.
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5

Smad4 Variant Expression and E-cadherin/Vimentin Analysis

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The A549 cells stably expressed wildtype Smad4 and its variants, which were used for the Western blot experiments. Collect and lyse cells with RIPA buffer for 30 min on ice. Total protein lysis was used to measure target protein expression. The anti-E-cad (Santa Cruz, Cat#sc-8426) and anti-VIM (Santa Cruz, Cat#sc-373717) antibodies were purchased from Santa Cruz. The anti-GAPDH (Cat#10494-1-AP) and Smad4 (Cat#10231-1-AP) antibodies were purchased from Proteintech. Load 30 μg total protein into 10% SDS-PAGE gel and run for 90 min at 120 V. Transfer the gel on the PVDF membrane and then incubate with 5% nonfat milk for 30 min by slowly shaking at room temperature. We then incubated the primary antibodies at 4°C in a freezer overnight and washed with TBST for 10 min, repeating 3 times. The secondary antibodies were then incubated at room temperature for 1 h by slowly shaking. The images of membrane were taken with a standard chemiluminescence.
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6

Western Blot Analysis of Stem Cell Markers

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Cells or tissues were lysed in RIPA buffer containing phosphatase inhibitor cocktail I (Sigma) and protease inhibitor cocktail mini-tablet (Roche Diagnostics, Indianapolis, IN). Proteins in the lysates were separated on SDS-PAGE and transferred onto polyvinylidenedifluoride membrane. After blocking with 5% non-fat milk in PBST, primary antibodies for ALDH1A1 (1:500, Proteintech Group, 22109-1-AP, Chicago, IL), CD44 (1:500, Cell Signaling Technology, #3570, Beverly, MA), KLF4 (1:500, Proteintech, 11880-1-AP), HMGA2 (1:500, Proteintech, 20795-1-AP), NF90 (1:1,000, ImmunoWay, YT5036, Newark, DE), FLAG-tag (1:2,000, Cell Signaling Technology, #2368), SMAD4 (1:500, Proteintech, 10231-1-AP), p-SMAD2 (1:250, Phospho-Ser467, Signalway Antibody, 11322, College Park, MA), SMAD2 (1:500, AP0444) and β-actin (1:2,000, Bioworld) were used. The membranes were washed with PBST three times and incubated with horseradish peroxidase (HRP)-conjugated secondary antibody. The bands were visualized using enhanced chemiluminescence reagents (Millipore, WBKLS0100). Western blots were semi-quantified by Image J software (NIH).
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7

Western Blotting of Stem Cell Markers

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Western blotting was carried out with following primary antibodies: Cited1 (made in our lab or Genetex, GTX114559), Oct4 (made in our lab), Sox2 (made in our lab), phospho-Smad1/5 (Cell Signaling Technology, #9516), phospho-Smad2 (Cell Signaling Technology, #3101), total Smad5 (Cell Signaling Technology, #9517), total Smad2/3 (Cell Signaling Technology, #3102), Smad4 (Proteintech, 10231–1-AP), Bmpr2 (Abcam, ab96826), Elf5 (Santa Cruz, sc-9645), T (R&D, AF2085), Placental lactogen 1 (Santa Cruz, sc-376436), Flag (Abmart, M20018F), β-Actin (HuaBio, M1210–2) and α-Tubulin (Sigma, T5168). The inhibitors were purchased from STEMCELL (SB431542: #72232), Selleckchem (LDN193189: S2618; K02288: S7359; protease inhibitor cocktail: B14002; phosphatases inhibitor: B15002) and PeproTech (Noggin: #120–10 C), respectively.
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8

Western Blot Analysis of Epithelial-Mesenchymal Transition Markers

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Protein lysate was obtained from the cultured cells using the RIPA lysis buffer (Solarbio Corporation, Beijing, China). The protein concentration was measured with a bicinchoninic acid assay. Proteins were separated by 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis and transferred onto polyvinylidene fluoride membranes. The membrane was first incubated with rabbit anti-rat primary antibodies, such as E-cadherin (1:2,000; no. 20874-1-AP), fibronectin (FN; 1:3,000; no. 15613-1-AP), vimentin (1:2,000; no. 10366-1-AP), Smad2 (1:2,000; no. 12570-1-AP), Smad4 (1:2,000; no. 51144-1-AP), zinc-finger-enhancer-binding protein 1 (ZEB; 1:2,000; no. 21544-1-AP) (all from Proteintech Group Inc., Chicago, IL, USA), Smad3 (1:2,000, no. AF6362; Affinity BIO, Scoresby, Australia), Smad7 (1:2,000; no. AF5147; Affinity BIO), and β-actin (1:5,000; no. Ab8226; Abcam, Cambridge, UK), and then incubated with goat anti-rabbit horseradish peroxidase-conjugated-labeled secondary antibodies (1:5,000, # A0208, Beyotime Institute of Biotechnology, Haimen, China) for 1 h at room temperature. The blots were detected using enhanced chemiluminescence.
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9

Protein Quantification and Western Blot Analysis

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Cells were lysed, and proteins in the supernatant extracts were quantified using a BCA Protein Assay Kit (Beyotime). Total cell lysates containing 50 µg of protein were separated using sodium dodecyl sulfate‐polyacrylamide gel electrophoresis (SDS‐PAGE) and transferred onto nitrocellulose (NC) membranes (PALL). After blocking with 5% non‐fat dry milk in Tris‐buffered saline‐Tween‐20 (TBST) for 2 hours, the membranes were incubated with primary antibodies [the glyceraldehyde‐3‐phosphate dehydrogenase (GAPDH) antibody diluted at 1:3000; collagen I, collagen III, lysyl oxidase (LOX), osteopontin (OPN), vimentin, α‐SMA, smad2, p‐smad2, smad3, p‐smad3, smad4, smad7 and p‐smad7 antibodies diluted at 1:2000 or 1:1000] at 4°C overnight. The collagen I, collagen III, p‐smad2, p‐smad3 and p‐smad7 antibodies were purchased from Abcam, and the GAPDH, β‐tubulin, smad2, smad3, smad4, smad7, LOX, OPN, vimentin and α‐SMA antibodies were purchased from Proteintech. After three washes with TBST, the membranes were incubated with the corresponding horseradish peroxidise (HRP)‐conjugated secondary antibody (1:5000, GE, HyClone) at 37°C for 2 hours. The protein bands were visualized with enhanced chemiluminescence (ECL; Advansta) and detected using a ChemiDocTM MP imaging system (BIO‐RAD). The protein bands were then scanned using Image LabTM Software Version 4.1.
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10

Transgenic Mouse Model for Liver Fibrosis

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Green fluorescence transgenic male C57Bl/6 mice (n = 20) and normal male C57Bl/6 mice (n = 36) 2343 bought from Gem Pharmatech Biotechnology Co., LTD (Jiangsu, China), with certificate No.320727210100567527. The DMEM high-sugar medium, fetal calf serum (FBS), penicillin-streptomycin, phosphate buffer (PBS), trypsin–EDTA were bought from Biological Industries (Israel). The Gli1 antibody was bought from Abcam (Cambridge, England). α-SMA, SMAD2, SMAD4, β-actin and goat anti-rabbit IgG II were bought from Proteintech Group Inc. (Rosemont, USA). The antibodies of CD44, CD177 and CD34 were bought from Cell Signaling Technology, Inc. (Boston, USA); TNF-a. IL-1, IL-1B, BUN and Scr ELISA kit were bought from Bluef (Shanghai, China) Biotechnology Development Co., LTD. (Shanghai, China). The apoptosis detection kit was bought from Beyotime Biotechnology (Shanghai, China).
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