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6 protocols using amine reactive dye

1

Astrocyte-Neuron Cytotoxicity Assay with AQP4-IgG

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Specified concentrations of AQP4-IgG (or control human IgG, Thermo Fisher Scientific, Rockford, IL) and human complement (Innovative Research, Novi, MI) were added in Hank’s buffer, and cells were incubated at 37 °C for specified times. In some experiments, cells were exposed to serum of an AQP4-IgG seropositive NMO patient who met the revised diagnostic criteria for clinical disease. A fixable dead-cell stain (amine-reactive dye, Invitrogen, Eugene, OR) at 1:1000 dilution was added 30 min prior to cell fixation. In some experiments, C1q- or C6-deficient human complement (Innovative Research, Novi, MI) was used instead of normal complement. In some experiments, the astrocyte toxin α-aminoadipic acid (Santa Cruz Biotechnology, Dallas, TX) at 2 mM was added to astrocyte-neuron cocultures for 75 min.
For live-cell real-time imaging, astrocyte-neuron cocultures were grown on 6-well plates and imaged by phase-contrast optics using a 20×, 0.45 NA objective lens on a Nikon Eclipse Ti microscope equipped with an environmental chamber at 37 °C and 5% CO2. Ethidium homodimer-1 (1 μM, Invitrogen, Eugene, OR) was added to the culture medium prior to image acquisition. Transmitted light (phase-contrast) and red fluorescence images were obtained sequentially every 2 min for a 30-min baseline period and then for 2 h following addition of 20 μg/ml AQP4-IgG and 2% complement.
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2

Cryopreserved PBMC Sorting for Flow Cytometry

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Cryopreserved PBMCs were thawed in RPMI-1640 media supplemented with 10% FBS, 1x non-essential amino acids (Gibco #11140050), and 10mM Hepes (Gibco # 15630080), 2mM L-glutamine (Gibco # 25030081), 100U/mL penicillin/streptomycin (Gibco # 15140122) (cRPMI). DNAase and MgCl2 were included for cryopreserved tumor samples. Cells were washed with 1× PBS and stained with an amine–reactive dye (Invitrogen) for 20 minutes at room temperature to assess cell viability, followed by an antibody cocktail in cRPMI for 45 minutes at room temperature. Samples were sorted on a BD FACSAria II machine into RPMI-1640 media supplemented with 50% FBS, 1% Hepes, 1% L-glutamine, 1% penicillin/streptomycin. A small aliquot of all sorted samples were run as a purity check. Voltages on the machine were standardized using fluorescent targets and Spherotech rainbow beads (#URCP-50–2F). Not all T cell subsets were captured from each donor due to limitations in cell number, 2500–68000, average ~45000, cells were sorted per subset per for each assay.
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3

Flow Cytometry Staining Protocol

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Cells were thawed in staining media (SM) consisting of PBS with 3% FCS, 5mM EDTA, and 1% penicillin/streptomycin. Cells were washed with 1× PBS and stained with an amine–reactive dye (Invitrogen #L34966) for 20 minutes to assess cell viability, followed by an antibody cocktail in SM for 45 minutes, then streptavidin-Brilliant Blue 790 (BD Biosciences) in SM for 20 minutes. Permeabilization was performed using the Foxp3 Fixation/Permeabilization Concentrate and Diluent kit (eBioscience #00–5521-00) for 20 minutes. Intracellular staining with antibody cocktails was done for 2 hours. All steps were performed at room temperature. Samples were run on a BD Symphony A5 instrument. Voltages on the machine were standardized using fluorescent targets and Spherotech rainbow beads (#URCP-50–2F). Data were analyzed with FlowJo software (version 10.5.3, TreeStar).
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4

T-cell Immune Response Profiling

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Intracellular and extracellular staining was applied for T-cell analysis after 10 days of expansion. 2×106 PBMCs were restimulated with an EBNA-1 or CMV-pp65 peptide pool (JPT, Berlin, Germany) at (1 µg/mL) or DMSO (Sigma Aldrich, Schnelldorf, Germany) as negative control for 5 h. Brefeldin A (7.5 µg/mL) (Sigma Aldrich, Schnelldorf, Germany) was added after 1 h of stimulation. Live/dead cells were discriminated using an amine reactive dye (Invitrogen, Life Technologies, Darmstadt, Germany) and stained with fluorescence conjugated monoclonal antibodies against CD3, CD4, CD8, PD-1, IFN-y, TNF-α and IL-2 (BD Biosciences, NJ, USA). Background events in DMSO controls were subtracted from events counted in response to EBNA-1 or CMV-pp65 stimulation. Data acquisition was performed on BD LSR II (Becton Dickinson, NJ, USA) and analysis was done using FlowJo software.
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5

Purification and Labeling of Leukotoxins

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His-tagged fusions of unlabeled subunits of the leukotoxins LukSF-PV, LukED and LukAB were purified from E. coli lysates or S. aureus supernatants as described elsewhere17 (link),24 (link).
The labeling of the LukD subunit with a 680nm fluorescent tag (LukD680nm) was carried out using a Thermo Scientific Dylight Amine Reactive Dye according to manufacturer’s instructions. To determine binding of LukD680nm to PMN-HL60 cells, increasing concentrations of LukD680nm were incubated with 5×105/mL PMN-HL60 cells on ice for 10 min. Cells were washed once with RPMI+10% FBS, followed by data acquisition on an LSRII flow cytometer (BD Biosciences) using the FACSDiva software. Data were analyzed using FlowJo software (Treestar).
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6

Characterization of Leukotoxin Binding

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His-tagged fusions of unlabelled subunits of the leukotoxins LukSF-PV, LukED and LukAB were purified from E. coli lysates or S. aureus supernatants as described elsewhere17 (link)24 (link).
The labelling of the LukD subunit with a 680-nm fluorescent tag (LukD680 nm) was carried out using a Thermo Scientific Dylight Amine Reactive Dye according to manufacturer's instructions. To determine binding of LukD680 nm to PMN-HL60 cells, increasing concentrations of LukD680 nm were incubated with 5 × 105 ml−1 PMN-HL60 cells on ice for 10 min. Cells were washed once with RPMI+10% FBS, followed by data acquisition on an LSRII flow cytometer (BD Biosciences) using the FACSDiva software. Data were analysed using the FlowJo software (Treestar).
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