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M per mammalian protein extract reagent

Manufactured by Thermo Fisher Scientific
Sourced in United Kingdom

M-PER mammalian protein extract reagent is a buffer solution designed for the efficient extraction of proteins from mammalian cell and tissue samples. It is intended to be used as a tool for protein isolation and purification without further interpretation of its intended use.

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8 protocols using m per mammalian protein extract reagent

1

Immunoblotting of Extracellular Vesicles

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Whole-cell lysates were prepared with M-PER Mammalian Protein Extract Reagent (Thermo Scientific). Cell lysates or EV suspensions were denatured in 4× sample buffer solution without 2-Mercaptoethanol (Wako Pure Chemical Industries). Signals were detected using ImmunoStar LD (Wako Pure Chemical Industries). Western blots were performed as described previously [27] using antibodies directed to CD9 (sc-59140; Santa Cruz Biotechnology), CD63 (556019; BD Biosciences), GFP (M048-3; MBL), L1TD1 (6439; ProSci), L1-ORF1p (MABC1152; Merck), L1-ORF2p (sc-67197; Santa Cruz Biotechnology), APOBEC3B (ab184990; Abcam), APOBEC3C (GTX102164; GeneTex), APOBEC3F (ab227962; Abcam) or GAPDH (MAB374; Millipore). Uncropped blots are shown in Figures S7, S8, and S9.
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2

ARPE-19 Cells Treatment and Protein Analysis

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ARPE-19 cells were incubated for 24 hr with vehicle (DMSO), D1 (5 µM), or D3 (5 µM) in 10-cm dishes containing serum-free DMEM (Satoh et al., 2000 (link), 2003; Sasaki et al., 2011 (link), 2013 ). The cells were lysed in buffer (M-PER mammalian protein extract reagent, catalog #78503, Thermo Scientific, Waltham, MA) supplemented with a protease inhibition cocktail (Complete Protease Inhibitor Cocktail Tablets; catalog #11836170001, Roche, Waltham, MA). Total cell lysates (10 µg each) were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and then transferred onto polyvinylidene fluoride membranes. HO-1, NQO1, HSP70, and glyceraldehyde 3-phosphate dehydrogenase (GAPDH) were detected with specific antibodies, and the signals were detected using peroxidase-conjugated secondary antibodies. The protein signals were enhanced by use of a chemiluminescence assay (ECL Western blotting; Amersham Pharmacia, Piscataway, NJ).
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3

Protein Extraction and Western Blot Analysis

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To obtain protein extracts, the cell pellets were lysed using M-PER mammalian protein extract reagent (78501, Thermo Fisher Scientific) containing protease (P8340, Sigma) / phosphatase (P5726, Sigma) inhibitor cocktail. Cell lysates were resolved on 4%-12% of Bis-Tris gels and transferred onto nitrocellulose membranes. After incubation with appropriate antibodies (Recombinant Anti-MMP14 antibody [Abcam, ab51074] or Beta-Actin Antibody [Santa Cruz, sc-1616]), blots were developed and visualized with Clarity ECL Western Blotting Substrates (Bio-Rad Laboratories Inc.). The detection of bands was performed using ChemiDoc imaging system (Bio-Rad Laboratories Inc.)
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4

Quantifying FADS2 Protein in Heart Organoids

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Heart organoids total proteins were extracted from 8 individual organoids per condition using M-PER mammalian protein extract reagent (Thermo). Total proteins concentration in lysates was measured by BCA Protein Assay Kit (Thermo). FADS2 protein in heart organoids lysates was measured using a human FADS2 RTU ELISA Kit (MyBioSource).
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5

Mammalian Protein Extraction and Western Blot

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After removing supernatant, cells were washed once with 1X PBS (Dulbecco’s). M-PER Mammalian Protein Extract Reagent (Thermo Scientific) was added for 15 min to lyse cells and extract proteins from each sample. The protein concentration of the lysates was determined using Quick Start Bradford Assay (Bio-Rad) according to manufacturer’s instructions. Samples were resuspended with water and Pierce Lane Marker Reducing Sample Buffer and boiled at 95°C for 5 min. Samples were run and analysed as described in the preceding texts. After revealing the Western blot for experimental protein, the membranes were stripped using stripping buffer (Thermo Scientific) for 5 min and reprobed with GAPDH antibodies (Cell Signaling), which also confirmed equal loading of protein for the different lanes of the blot.
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6

Protein Extraction and Western Blot Analysis

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To obtain protein extracts, the cell pellets were lysed using M-PER mammalian protein extract reagent (78501, Thermo Fisher Scientific) containing protease (P8340, Sigma) / phosphatase (P5726, Sigma) inhibitor cocktail. Cell lysates were resolved on 4%-12% of Bis-Tris gels and transferred onto nitrocellulose membranes. After incubation with appropriate antibodies (Recombinant Anti-MMP14 antibody [Abcam, ab51074] or Beta-Actin Antibody [Santa Cruz, sc-1616]), blots were developed and visualized with Clarity ECL Western Blotting Substrates (Bio-Rad Laboratories Inc.). The detection of bands was performed using ChemiDoc imaging system (Bio-Rad Laboratories Inc.)
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7

Western Blot Analysis of MAPK Signaling

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Protein lysates were obtained from HORCs using Mammalian Protein Extract Reagent M-PER supplemented with Halt Phosphatase Inhibitor Cocktail, Protease Inhibitor Cocktail and 5mM EDTA (All from Thermo Scientific, Loughborough, UK) for 20min on ice followed by centrifugation at 13,000rpm for 5min. Protein concentration of each lysate was determined using a bicinchoninic acid (BCA) protein assay (Thermo Scientific, Loughborough, UK). Equal amounts of protein were loaded onto 10% SDS-PAGE gels and proteins separated by electrophoresis. Proteins were transferred to PVDF membrane (Perkin Elmer Life Sciences, Cambridge, UK) using a semi-dry transfer blotter (Bio-Rad Laboratories, Hemel Hempstead, UK). Membranes were blocked with PBS-T (0.1% Tween-20 in PBS, 5% fat-reduced milk), hybridized with primary antibody followed by incubation with secondary antibody (GE Healthcare, Buckinghamshire, UK). Bands were visualised using chemiluminescent ECL Plus Western Blot Detection reagent (GE Healthcare, Buckinghamshire, UK) and net band intensity determined (1D 3.5 software, Eastman Kodak, Rochester, NY). Primary antibodies (Cell Signaling Technology, Danvers, MA, USA) against phospho- and total p38, phospho- and total JNK were used at 1:250, 1:1000, 1:500 and 1:500 respectively.
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8

Protein Extraction and Western Blotting

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Protein extraction was performed by lysing explants in Mammalian Protein Extract Reagent M‐PER supplemented with Halt Phosphatase Inhibitor Cocktail, Protease Inhibitor Cocktail and 5 mM EDTA (All from Thermo Scientific, Loughborough, U.K.). Tissue was homogenized on ice for 20 minutes and then centrifuged at 13,000 rpm for 5 minutes to isolate the soluble cell extract. Protein concentration was determined using a bicinchoninic acid protein assay (Thermo Scientific, Loughborough, U.K.).
Ten micrograms of protein was loaded into 4%–12% precast gels and electro‐transferred to polyvinylidene difluoride (PVDF) membranes (Thermo Scientific, Loughborough, U.K.). Membranes were blocked in 5% dried skimmed milk in PBS with 0.2% Tween20 (Sigma‐Aldrich, Poole, U.K.) for 1 hour and incubated overnight with primary antibody (Supporting Information Table 1) in blocking solution at 4°C. Horseradish peroxidase (HRP) conjugated secondary antibodies (1:10,000, Vector Laboratories Ltd., Peterborough, U.K.) were used for 2 hours before signal detection using ECL Prime (Amersham, GE Healthcare, U.K.) and an Alliance Western blot imaging system (UVItec Ltd., Cambridge, U.K.).
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