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P ikkβ

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P-IKKβ is a protein kinase that phosphorylates the inhibitor of NF-κB (IκB) proteins, leading to their degradation and the activation of the NF-κB transcription factor. This biological function is a core component of the NF-κB signaling pathway.

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12 protocols using p ikkβ

1

LPS-induced NF-κB signaling modulation

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RAW264.7 cells plated at a density 1.8 × 106 cells/ml were incubated with LPS (100 ng/ml) at 37°C for 1 h. After that, the cells were washed extensively with PBS before being treated with CTP-NH2 for 3 h at 37°C, followed by lysis of the cells. Cytoplasmic and nuclear protein fractions were obtained using NR-PER Nuclear and Cytoplasmic Extraction Reagents (Thermo Fisher Scientific Inc., New Zwaland). The protein concentrations were assessed with a CA kit (KeyGEN Biotech. Nanjing, China) according to the manufacturer’s instructions. Afterwards, total protein (40 μg protein/lane) was separated on 10% SDS-PAGE gels and then transferred to PVDF membranes (Bio-Rad). Next, the membranes were blocked with 5% non-fat dried-milk containing 0.05% TBST and then immunoblotted with specific primary antibodies against IKK-β, p-IKK-β, IкB-α, p-IкB-α, NF-кB (p65), p-NF-кB (p-p65), and β-actin (Santa Cruz, CA, USA). After being washed with TBST, the membranes were incubated with HRP-conjugated secondary antibodies (HuaAn, Hangzhou, China). A ChemiDoc MP Imaging System (Bio-Rad, Hercules, CA, USA) was used to quantify the density of the specific proteins.
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2

Apoptosis Pathway Protein Detection

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Caspase-3 and caspase-8 antibodies were purchased from Cell Signaling Technology Inc. (Beverly, MA, USA). Fas, DR3, DR4, DR5, DR6, IKKβ, p-IKKβ, IκBα, p-IκBα, p50, p65, Bcl-2, Bax, Histone-H1 and β-actin antibodies were purchased from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA, USA). The cell culture materials were obtained from GIBGO® of Introgen™ (Seoul, Korea).
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3

Anti-inflammatory Effects of 6-Shogaol

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6-Shogaol (Sigma-Aldrich, St.Louis, MO, USA), Fetal bovine serum (FBS) (Thermoscientific, USA), RPMI1640 medium (Gibco, Grand Island, NY, USA), 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazoliumbromide (MTT), polyvinylidenedifluoride (PVDF) membranes and enhanced chemiluminescence (ECL) kit (Invitrogen) were used in the study. ELISA kits for determining cytokines-TNF-α, IL-1β and IL-6 were purchased from Biolegend (San Diego, CA, USA). Buffers used in Western blotting analysis were procured from Beyotime Institute of Biotechnology (Beijing, China). Antibodies against VEGF, VEGF-A, VEGFR-2 and COX-2 were procured from Cell Signaling Technology (Danvers, MA, USA). Horseradish peroxidase-labelled IgG secondary antibodies, PGE2, TNF-α, NF-κB p65, IκBα, p-IκBα, p-IKKβ, IKKβ, p-IKKα, IKKα and β-actin were purchased from Santa Cruz Biotechnology (Texas, USA).
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4

Western Blot Analysis of NF-κB Pathway

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PANC-1 and BxPC-3 cells (treated with the test compound after 24 h starvation, and then stimulated with 1 ng/mL TNF-α for 30 min) were lysed in a lysis buffer for 15 min on ice. The cell lysates were centrifuged at 4°C to remove insoluble components. Protein (80 μg) from each sample was subjected to SDS-PAGE and transferred onto PVDF membranes (Bio-Rad Laboratories). After incubation with 5% skim milk in TBST for 1.5 h, the membranes were incubated with primary antibodies (pIKKβ, IκB, cleaved PARP, bcl-2, and GAPDH; Santa Cruz) at 4°C overnight and then with the horseradish peroxidase-labeled secondary antibody at room temperature for 1 h. The results were visualized using enhanced chemiluminescence reagents (Bio-Rad Laboratories), and the band densities were quantified using ImageJ analysis software (National Institutes of Health, Bethesda, MD, USA).
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5

Western Blot Analysis of NF-κB Pathway

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Jejunum tissues were ground and lysed using a Total Protein Extract Kit (KeyGEN Biotech, Nanjing, China) according to manufacturer's instructions. Proteins in each supernatant were separated by 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis and transferred onto a nitrocellulose membrane. Next, the membranes were blocked with 5% (w/v) skim dried milk proteins in 0.05% (w/v) TBST and immunoblotted overnight with primary antibodies against nuclear factor-κ-gene binding (NF-κB; p65), phospho-NF-κB (p-NF-κB; p-p65), inhibitory subunit of NF-κB (IκB)-α, phosphor-IκB-α (p-IκB-α), inhibitor of NF-κB kinase (IKK)-β, phosphor-IKK-β (p-IKK-β), ZO-1, occluding, or β-actin (Santa Cruz, CA, USA) at 4°C. After washing with TBST, the proteins of interest were labeled with HRP-conjugated secondary antibodies (HuaAn, Hangzhou, China) for 1 h. Bands were detected using the SuperSignal West Femto maximum sensitivity substrate (Pierce Biotechnology, Rockford, Illinois, USA).
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6

Investigating Apoptosis Signaling in Colon Cancer

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HCT116 and SW480 colon cancer cells were treated with MMPP (0-15 μg/mL) for 24 h, then were homogenized with a protein extraction solution (PRO-PREP™, iNtRON Biotechnology, Seongnam, Gyeonggi, Korea), and lysed by 60 min incubation on ice. Western blotting was described elsewhere [36 (link)]. After a short washing in TBST, the membranes were immunoblotted with the following primary antibodies: caspase-3 and caspase-8 (1:1000 dilutions; Cell Signaling, Beverly, MA, USA) and Fas, DR3, DR4, DR5, DR6, IKKβ, p-IKKβ, IκBα, p-IκBα, p50, p65, Bcl-2, Bax, Histone-H1 and β-actin (1:1000 dilutions; Santa Cruz Biotechnology, Santa Cruz, CA, USA). The blots were performed using specific antibodies followed by second antibodies and visualization by chemiluminescence (ECL) detection system.
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7

Myocardial Protein Expression Analysis

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Myocardium tissues (100 mg) were immersed in lysis buffer on ice for 1 hour. The concentration of the proteins extracted from the myocardium tissues was quantified using a BCA kit (Beyotime, Beijing, China). The proteins were subjected to SDS‐PAGE and transferred onto a membrane. After being confined in bovine serum albumin, the proteins were incubated with primary antibodies of Rac1 (sc‐514583, 1:1000), phosphorylated (p)‐IKKα (sc‐166231, 1:1000), IKKα (sc‐166231, 1:1000), p‐IKKβ (sc‐23470‐R, 1:1000), IKKβ (sc‐8014, 1:1000), p65 (sc‐8008, 1:200) (Santa Cruz Biotechnology), p‐IκBα (#4814, 1:1000), IκBα (#9246, 1:1000) and p‐p65 (#3033, 1:1000) (Cell Signaling Technology). After wash, the proteins were incubated with secondary antibody. After the incubation, the membrane was subjected to color development by electrochemiluminescence. The ratio of the average gray value of Rac1 to that of the corresponding reference protein GAPGH represents the relative expression of the target protein.
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8

Myricitrin Isolated from Myriace rubrae

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Myricitrin was isolated from the grounded barks of Myriace rubrae and was identified by Professor Rui-le Pan. The purity is over 99%, as detected by high-performance liquid chromatography (UV and DAD)41 (link). Metformin (Sino-American Shanghai Squibb Pharmaceuticals Ltd,) was used as the positive control in this study. All cell culture materials, Dulbecco’s modified Eagle’s medium (DMEM), fetal bovine serum (FBS), and penicillin/streptomycin were obtained from Gibco (NY, USA). The kits for determining the CK, LDH and AST enzyme levels were purchased from Jiancheng Bioengineering Institute (Nanjing, China). Akt inhibitor (LY294002) was purchased from Selleckchem (TX, USA). Primary antibodies against Akt, p-Akt, GSK-3β, p- GSK-3β, P65, p-IKKβ, TNF-α, ERK, p-ERK, TGF-β1, Collagen I, Caspase-3, Caspase-9, Bcl-2, Bax, Nrf2, HO-1, NQO-1, γ-GCS, Lamin B1 and β-actin were obtained from Santa Cruz Biotechnology (CA, USA). FITC-anti-rabbit IgG second antibody was purchased from Molecular Probes (Life Technologies, CA, USA).
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9

NF-κB Signaling Pathway Protein Quantification

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Whole protein in the serum was collected (whole-protein extract kit, KeyGEN Biotech, Nanjing, China), and protein concentration was calculated using a bicinchoninic acid kit (Nanjing KeyGEN Biotech) as described in the manufacturer’s instructions. Protein supernatant was separated by 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis and transferred onto a nitrocellulose membrane. Next, the membranes were blocked with 5% defatted milk proteins in 0.05% TBST and probed with nuclear factor-κ-gene binding (NF-κB; p65), phosphor-NF-κB (p-NF-κB; p-p65), inhibitory subunit of NF-κB (IκB)-α, phosphor-IκB-α (p-IκB-α), inhibitor of NF-κB kinase (IKK)-β, phosphor-IKK-β (p-IKK-β), and β- actin-specific monoclonal antibodies (Santa Cruz, CA, USA) overnight at 4°C. Membrane sections were incubated with HRP-conjugated secondary antibody (Santa Cruz Biotechnology; 1:1000). ChemiDoc MP Imaging System (Bio-Rad, Hercules, CA, USA) was used to quantify the density of the specific proteins.
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10

Physcion-induced Immune Modulation and Signaling

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We purchased physcion (purity ≥ 98%, Figure 1A) from Cayman Chemical Company (Ann Arbor, MI, USA); Isocove’s Modified Dulbecco’s Medium (IMDM) from Gibco BRL (Grand Island, NY, USA); fetal bovine serum (FBS) from Welgene (Daegu, Korea); DEX, PMACI, 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT), BAPTA-AM, Fura-2/AM, DNFB, and O-phthaldialdehyde from Sigma Chemical Co. (St. Louis, MO, USA); RPMI Media 1640 from Thermo Fisher Scientific Inc. (Waltham, MA, USA); anti-TSLP from R & D system Inc. (Minneapolis, MN, USA), IL-6 from Pharmingen (Sandiego, CA, USA), TNF-α (Pharmingen), IL-1β (R & D system Inc.), IL-4 (Pharmingen), IFN-γ (Pharmingen), and IgE antibodies (Pharmingen); anti- pERK, ERK, pJNK, JNK, pp38, p38, RIP2, caspase-1, pIKKβ, NF-κB, pIκBα, poly-ADP-ribose polymerase (PARP), GAPDH, and peroxidase-conjugated second antibodies from Santa Cruz Biotechnology (Santa Cruz, CA, USA); RIPA buffer from Cell signaling (Billerica, MA, USA).
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