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Vimentin antibody

Manufactured by Merck Group
Sourced in United States

Vimentin antibody is a laboratory reagent used in various cell biology and immunohistochemistry applications. It is a protein that binds specifically to the intermediate filament protein vimentin, which is a structural component of the cytoskeleton in many cell types. The vimentin antibody can be used to detect and visualize the distribution of vimentin within cells.

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15 protocols using vimentin antibody

1

Western Blot Analysis of Cellular Proteins

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E-Cadherin antibody was obtained from BD Biosciences. Vimentin antibody was obtained from Sigma. Antibodies to cyclophilin, GSTP1, β-actin, phospho-AMPK α (Thr172), AMPK α, phospho-ACC (Ser79), ACC, phospho-S6, total S6, phospho-JNK (Thr183/Tyr185), JNK, and GAPDH were obtained from Cell Signaling Technology. FLAG antibody was obtained from Cayman Chemicals.
Cells were lysed in lysis buffer (CST) containing both protease and phosphatase inhibitors. Proteins were resolved by electrophoresis on 4–15% Tris-glycine precast Mini-PROTEAN TGX gel (BioRad Laboratories) and transferred to nitrocellulose membranes using the iBlot system (Invitrogen). Blots were blocked with 5% nonfat milk in Tris-buffered saline containing Tween-20 (TBST) solution for 1 hour at room temperature, washed in TBST, and probed with primary antibody diluted in recommended diluent per manufacturer overnight at 4°C. Following washes wit h TBST, the blots were incubated in the dark with a IR-linked secondary antibody at room temperature for 1 hour. Blots were visualized using an Odyssey Li-Cor scanner after additional washes.
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2

Multilineage Cellular Characterization

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The reagents/materials used in the study are as follows: Bright green 2x qPCR Master Mix (Applied Biological Materials Inc., Canada), CD44 and CD45 antibodies (BD Biosciences, USA), NeuN antibody (Biolegend, USA), CD90 antibody (Cedarlane Cellutions Biosystems, Canada), glial fibrillary acidic protein(GFAP)antibody (Cloud Clone, USA), bovine serum albumin, DAPI, Tween-20 (MP Biomedicals, USA), β-III tubulin antibody (R&D Systems, USA), Alexa fluor 546 rat anti-rabbit secondary antibody (Santa Cruz Biotechnology Inc., USA), AP, MTT, TQ, Triton X-100, Vimentin antibody (Sigma Aldrich, USA), c-kit (CD117) antibody, DMEM, L-glutamine, penicillin-streptomycin, RevertAid First Strand cDNA synthesis kit, Sodium pyruvate, Trypsin EDTA (Thermo Fisher Scientific, USA),
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3

VEGF Signaling Pathway Analysis

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Recombinant human VEGFA (R&D, Cat. no. 293-VE) was used for western blotting and live cell imaging experiments to stimulate VEGF signalling. Fibronectin antibody was used for western blotting (1:2,000) and immunofluorescence imaging (1:1,000) (Abcam, Cat. no. ab2413). Notch1 antibody (1:1,000) and VEGF-neutralizing antibody (1:1,000) were obtained from R&D Systems (Cat. nos. AF3647 and MAB293). Primary antibodies against Dll4 (1:500) and VEGFA (1:500) were obtained from Santa Cruz (Cat. nos. sc-365429 and sc-152). VE-cadherin (1:500), GAPDH (1:20,000) and phospho-FAKY397 (1:500) primary antibodies were obtained from Cell Signaling (Cat. nos. 2158, 2118 and 8556). Vimentin antibody was from Sigma (V6630, 1:1,000). E-cadherin and N-cadherin antibodies (1:1,000) were obtained from BD Biosciences (Cat. nos. 610181 and 610920). Alexa Fluor 555 and 647 secondary antibodies (Invitrogen) and DAPI (4′,6-diamidino-2-phenylindole; Invitrogen) were used for 3D immunofluorescence. Horseradish peroxidase-conjugated secondary antibodies (Jackson ImmunoResearch) were used for western blotting.
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4

Quantifying Renal Mast Cells and Fibrosis

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Quantification of mast-cell infiltration in renal tissue was performed by immunohistochemistry using CD117 antibody (Abcam, Cambridge, UK). Quantification of vimentin positive cells was performed by immunohistochemistry using vimentin antibody (Sigma-Aldrich, Lyon, France). Histological evaluation of interstitial fibrosis by Sirius Red staining per field was quantified with ImageJ software. All histological evaluations were performed under blinded evaluation by a pathologist.
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5

Confocal Microscopy of Cell Adhesion

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Confocal laser scanning microscopy was performed using a Leica TCS SP2 microscope (Leica Microsystems) as previously reported [31 (link)]. Briefly, cells were grown on 10 mm glass coverslips in 24-well culture plates. After methanol fixation for 10 min, cells were incubated with an E-cadherin antibody (1:100, Invitrigen) or Vimentin antibody (1:100, Sigma), followed by incubation with goat-anti-mouse-Alexa 594 conjugated antibodies (1:500, Invitrogen). Cell nuclei were counterstained with DAPI (1:1000, Invitrogen). Confocal image series were recorded on a LEICA TCS SP2 laser scanning microscope.
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6

Western Blot Antibody Validation Protocol

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E-cadherin antibody (610181) was purchased from BD Biosciences, SIRT1 (07-131)
and β-tubulin (05–661) antibodies were purchased from
Millipore. Vimentin antibody (V5255) was purchased from Sigma. The rabbit
polyclonal antibody specifically recognizing SIRT7 was raised against the
following synthetic peptide GWFGRGCTKRTKRKKVT and the affinity-purified antibody
was used in this study (ref. Michishita E, 2005). Acetylated lysine 18 of
histone H3 (H3K18Ac) antibody (ab1191) was purchased from Abcam and Lamin B
antibody (C20) from Santa Cruz Biotechnology.
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7

Immunocytochemical Analysis of Cytoskeletal and Nuclear Proteins

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After the pretreatment as indicated, the cells grown on cover slips were fixed with 4% paraformaldehyde and permeabilized with 0.1% Triton X-100. After the cells were blocked in 3% BSA for 30 min, they were incubated with α-SMA antibody (Abcam, USA; 1:100), Vimentin antibody (Sigma, USA; 1:100) and p65 antibody (CST, USA; 1:800) overnight at 4°C, then washed and incubated for 30 min with an Alexa Fluor 488-conjugated anti-mouse IgG F(abʹ)2 fragment (Invitrogen, USA; 1:200) or an Alexa Fluor 549-conjugated anti-mouse IgG F(abʹ)2 fragment (Invitrogen, USA; 1:200) at room temperature in the dark. Cells were co-stained with 4′, 6-diamidino-2-phenylindole (DAPI; Invitrogen, USA; 1:300) to detect nuclei. Cells were observed and imaged using a TCS SP2 laser-scanning confocal microscope (Leica Microsystems, Germany).
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8

Dystrophin and Vimentin Expression in ADSC-Treated Muscle

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Mice were intraperitoneally anesthetized with 5% chloral hydrate (200 μL/20 g) and euthanized by cervical dislocation 12 weeks after ADSC transplantation. The gastrocnemius muscle was frozen rapidly in isopentane cooled with liquid nitrogen. Specimens were kept at –80°C until sectioning. Serial transverse cryosections of 6 μm thickness were made for hematoxylin-eosin staining, Masson trichrome staining and immunofluorescence analysis. Slides were blocked with 10% normal goat/rabbit serum after air-drying at room temperature with cold acetone for 10 minutes, and were then incubated overnight at 4°C with rabbit anti-dystrophin polyclonal antibody (1:100; Abcam, Cambridge, UK) and vimentin antibody (1:200; Sigma-Aldrich). After three washes with phosphate-buffered saline, slides were incubated with goat anti-rabbit Cy3-conjugated secondary antibodies (1:400; Chemicon, Temecula, CA, USA) for 1 hour at room temperature.
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9

Immunohistochemistry of Kidney Tissue

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We used frozen human samples that were cut in slices of 5 μm. The tissue sections were fixed during 20 min in cold acetone and blocked for 1 h with normal goat serum. The primary antibodies anti-ZFYVE28 (Atlas antibodies, cat: HPA038175) and anti-total-EGFR (Abcam, cat: ab2430) were incubated over night at 4 °C (dilutions 1:500 and 1:1000 respectively). The nephrin antibody has been described previously22 (link) and the vimentin antibody was purchased for Sigma (cat: V5255) Those two antibodies were incubated for 1 h at room temperature (Dilution 1:1000).
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10

Protein Interaction Analysis by Co-immunoprecipitation

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Lysate (50 µg) was used for Western blot analysis by standard protocols. Primary antibodies used were as indicated earlier. Horseradish peroxidase (HRP)-conjugated secondary antibodies against appropriate species were used and signal developed using Clarity Western ECL substrate (Bio-Rad). Western blot intensities were normalized to GAPDH and quantification was carried out using ImageJ (NIH). For coimmunoprecipitation assays, 500 µg lysate of HEK293T cells overexpressing Rudhira fragments were incubated overnight with 10 µl of FLAG M2 beads (Sigma Chemical), 10 µl of β-tubulin antibody (DSHB), or vimentin antibody (Sigma Chemical), captured on Protein G-sepharose beads (Sigma Chemical), washed three times in lysis buffer, and analyzed by immunoblotting with anti-β-tubulin (Abcam), vimentin (Sigma Chemical; Abcam), or FLAG (Sigma Chemical) antibody.
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