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6 protocols using rabbit anti g6pdh

1

Yeast Strain and Plasmid Characterization

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Yeast (Saccharomyces cerevisiae) strains used in this paper are summarized in S1 Table. Plasmids used in this study are summarized in S2 Table. Gene disruptions and tagging were performed by a standard PCR-based method ([49 (link)]. All chemical reagents were purchased from Fisher Scientific (NJ, USA), except for the following: Nitrogen bases were purchased from US Biological (Swampscott, MA); ProtoGel for Western blots from National Diagnostics (Atlanta, GA); Bacto peptone and Bacto agar from BD Difco (Franklin Lakes, NJ); salmon testes DNA, amino acids, 1-naphthyl phosphate, 2-nitrophenyl β-D-galactopyranoside and protease inhibitors from Sigma Aldrich (St. Louis, MO); glass beads from BioSpec Products (Bartlesville, OK); restriction enzymes and buffers from New England Biolabs (Ipswich, MA).
Antibodies used in this study included mouse monoclonal anti-GFP (Roche Diagnostics), rat anti-HA (Roche Diagnostics), mouse anti-HA (Covance), rabbit anti-G6PDH (Sigma), rabbit anti-Ape1 (a kind gift from Dr. Ohsumi), rabbit anti-Atg8 (a kind gift from Dr. Ohsumi), goat anti-rat HRP (Abcam), goat anti-rabbit HRP and goat anti-mouse HRP (GE Healthcare).
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2

Immunoblotting Antibody Dilution Guide

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For immunoblotting, mouse anti-GFP (clone 7.1/13.1; Roche), mouse anti-Pgk1 antibody (no. 459250; Invitrogen), mouse anti-HA (12CA5; Roche), rabbit anti-G6PDH (Sigma-Aldrich), and mouse anti-ALP (459260; NOVEX) were purchased and used at dilution factors of 1:1,000, 1:5,000, 1:1,000, 1:20,000, and 1:500, respectively.
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3

Western Blotting of Cell Lysates

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Whole cell lysates were prepared from frozen cell pellets by lysis
in trichloroacetic acid as described previously [20 (link)]. Protein concentrations were measured by a
bicinchoninic acid assay (Thermo Scientific # 23225), and equal amounts (10
or 20 μg) were loaded per lane. Proteins were resolved by
SDS–PAGE and transferred to PVDF membranes (Immobilon-P; Millipore)
in a submerged tank. Membranes were blocked (1 hr, room temperature) in TTBS
(0.2% Tween-20, 20 mM TRIS-HCl, 500 mM NaCl, pH 7.5) containing 5% non-fat
milk, and then probed with antibodies in the equivalent solution. Primary
antibodies were mouse anti-HA (1:1000, Covance #MMS101R), mouse anti-V5
(1:5000, Invitrogen #46–0705) mouse anti-phospho-p44/42 (1:1000, Cell
Signaling Technology #9101), mouse anti-GST (1:1000, Santa Cruz
Biotechnologies #sc-138), rabbit anti-myc (1:200, Santa Cruz Biotechnologies
#sc-789), and rabbit anti-G6PDH (1:100000, Sigma #A9521). HRP-conjugated
secondary antibodies were goat anti-rabbit (1:3000, Jackson ImmunoResearch
#111–035-144), and goat anti-mouse (1:3000, BioRad #170–6516).
Enhanced chemilluminescent detection used a BioRad Clarity substrate
(#170–5060). Densitometry was performed using ImageJ software.
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4

Preparing total protein extracts from yeast cells

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Total protein extracts were prepared as described (Kushnirov, 2000 (link); von der Haar, 2007 (link)) with subtle modifications. Briefly, 8 ml of mid-log phase cells were treated with 10% trichloroacetic acid and pelleted by centrifugation. Cell pellets were washed with 10 ml 70% ethanol and 2x with 1 ml water, then re-suspended in 1 ml 0.2 M NaOH and incubated 10 min on ice. Cells were pelleted, resuspended in 160 x OD600 μl loading dye (120 mM Tris–HCl pH 6.8, 4% sodium dodecyl sulfate, 0.02% bromophenol blue, 20% glycerol), heated at 95°C for 10 min, and lysates clarified by centrifugation at 16,000 x g. Proteins were separated on 10% tris-glycine SDS-PAGE gels, transferred to 0.45 μm nitrocellulose membranes (Bio-Rad) and probed overnight at 4°C with mouse anti-HA (1:5,000; Sigma-Aldrich, 12CA5), rabbit anti-PSTAIR (1:5,000; Millipore-Sigma, 06–923), rabbit anti-p44/42 MAPK (1:2,500; Cell Signaling Technology, 9102) or rabbit anti-G6PDH (1:5,000; Sigma-Aldrich, A9521). Secondary anti-mouse and anti-rabbit antibodies conjugated to horseradish peroxidase were from Jackson ImmunoResearch (115–035-003 or 111–035-003) and used at 1:10,000 dilution for 60 min at 4°C. Immunoblots were developed using Clarity Western ECL Substrate (Bio-Rad) and imaged on a ChemiDoc MP multimode imager (Bio-Rad).
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5

Immunoblotting Technique for Protein Detection

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Immunoblotting was performed as described (Buchanan et al., 2019 (link)). The following antibodies were used for immunoblotting: mouse anti-HA (H9658, Sigma) at 1:2,000; rabbit anti-Ubc6 (gift from Thomas Sommer) (Walter et al., 2001 (link)) at 1:10,000; mouse anti-FLAG (F3165; Sigma) at 1:10,000; mouse anti-HA (16B12, BioLegend) at 1:1,000; mouse anti-MYC (9E10, Covance) at 1:10,000; rabbit anti-Doa10 at 1:2,000 (Kreft et al., 2006 (link)); rabbit anti-Cue1 at 1:2,000 (Cohen et al., 2015 (link)); mouse anti-PGK (459250, Thermo Fisher) at 1:20,000; rabbit anti-G6PDH (A9521, Sigma) at 1:20,000. Primary antibody incubations were followed with either peroxidase-coupled sheep anti-mouse or peroxidase-coupled goat anti-rabbit secondary antibodies (GE Healthcare) at 1:10,000 and visualized by enhanced chemiluminescence (Mruk and Cheng, 2011 (link)) with imaging on a G:Box system (Syngene).
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6

Yeast Strain and Antibody Protocol

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Yeast (Saccharomyces cerevisiae) strains used in this paper are summarized in Table S1. Plasmids used in this study are summarized in Table S2 Antibodies used in this study included mouse monoclonal anti-GFP (Roche Diagnostics), rat anti-HA (Roche Diagnostics), mouse anti-HA (Covance), rabbit anti-G6PDH
(Sigma), rabbit anti-Ape1 (a kind gift from Dr. Ohsumi), rabbit anti-Atg8 (a kind gift from Dr.
Ohsumi), goat anti-rat HRP (Abcam), goat anti-rabbit HRP and goat anti-mouse HRP (GE Healthcare).
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