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14 protocols using human ifn γ elispotpro kit

1

SARS-CoV-2 Spike Protein T Cell Responses

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The PepMix pool containing 15-mer peptides overlapping by ten amino acids from either SARS-CoV-2 Wuhan or Omicron spike S1 or S2 protein domains were purchased from JPT Peptide Technologies. T cell responses of post-vaccination and post-booster samples to the above peptide mixes were determined using a Human IFN-γ ELISpot PRO kit (Mabtech). Isolated PBMCs rested overnight in R10 (RPMI + 10% FBS + penicillin–streptomycin) at a concentration of 2–3 × 105 cells were stimulated in duplicate with peptide mixes at 2 μg ml−1 for each peptide, anti-CD3 and CEFX cell stimulation mix (JPT, PM-CEFX-2) as a positive control, or dimethylsulfoxide as a negative control for 16–18 h. Supernatants were harvested and stored at −80 °C. Following the development of plates according to the manufacturer’s instructions, the plates were read using the BioSys Bioreader 5000. Mean spot counts in dimethylsulfoxide-treated negative control wells were deducted from the means to generate normalized spot counts for all other treated wells. Cutoff values were previously determined16 (link).
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2

ELISPOT Assay to Measure IFN-γ and Granzyme B

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ELISPOT assay was performed using Human IFN-γ ELISpotPRO kit (MABTECH, Cincinnati, OH) according to the manufacturer’s instruction. Briefly, antigen presenting cells were pulsed with respective peptides at 37° C for 20 h, and the residual peptides that did not bind to cells were washed out to prepare peptide-pulsed cells as the stimulator cells. T cells were pre-treated with IL-2 (35 U/mL) for 16 h and then co-incubated with peptide-pulsed stimulator cells (2 × 104 cells/well) at 37° C for 20 h in 96-well plate. The supernatant was transferred into a new 96-well plate for ELISA assay. Spots were captured and analyzed by an automated ELISPOT reader, ImmunoSPOT S4 (Cellular Technology Ltd, Shaker Heights, OH) and the ImmunoSpot Professional Software package, Version 5.1 (Cellular Technology Ltd). To measure the secreted cytokine levels in the supernatant, we used OptEIA Human IFN-γ ELISA set (BD Biosciences), Human Granzyme B ELISA development kit (MABTECH) and read absorbance in a microplate reader at 450/570 nm.
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3

IFNγ ELISPOT Assay for Tumor-Specific T-cells

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Human IFNγ ELISPOT PRO Kit (MABTECH) was used according to manufacturer instructions. Plates were blocked with RPMI 1640 supplemented with 10% FBS for 1 h at 37 °C. The medium was aspirated, and effector cells (2.5 × 105) were seeded in triplicates in RPMI 1640 with 10% heat-inactivated FCS. PBMC isolated before treatment and at day + 30 post treatment, were used as effector cells. Stimulator cells were autologous mature DC loaded with tumor lysates (50–250 μg/ml). DC had been matured with TNF-α (50 ng/ml), IFN-α (1000 U/ml), and poly(ICLC) (20 μg/ml) for 48 h in AIM-V medium (BioWhittaker Lonza). DCs (5 × 104) were cultured with the effector cells. Negative control wells contained equally seeded with unloaded DC and without DC. Positive controls were standard SEB 1:100 dilution (SIGMA). Cells were incubated at 37 °C in 5% CO2 in a water-saturated atmosphere. After a culture period of 36 h, cells were removed by six washings with PBS/0.05% and ELISPOT was developed acording to manufacturer instructions and spots per well were automatically counted with automated immunospot counter (CTL).
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4

IFNγ Secretion Assay of TILs

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IFNγ secretion of TILs was measured by ELISPOT using Human IFNγ ELISpotPRO kit (MABTECH, Catalog number 3420–2APW-10) following the manufacturer’s instruction. Briefly, 5 × 104 resting TILs were co-cultured with 2 × 104 peptide-pulsed C1R A02:01 cells at 37°C for 20 hours in a 96-well plate. Spots were captured and analyzed by an automated ELISPOT reader, ImmunoSPOT S4 (Cellular Technology Ltd, Shaker Heights, OH), and analyzed with the ImmunoSpot Professional Software package, Version 5.1 (Cellular Technology Ltd).
The amount of secreted IFNγ, IL-2, and TNFα in the supernatant of T cells were quantified with ELISA set (BD Biosciences, Catalog number 555142, 555190, 555212). Briefly, 5 × 104 resting KIAA1429D1358E TCR-T cells were co-cultured with 2 × 104 peptide-pulsed C1R A02:01 cells at 37°C for 20 hours in a 96-well plate. The supernatant was collected, and the concentration of each protein was measured according to the manufacturer’s instruction.
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5

ELISpot Assay for CD8+ T-Cell Responses

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ELISpot assay was performed using Human IFN-γ ELISpotPRO kit (Mabtech) according to the manufacturer’s instructions. Briefly, plates were washed four times with PBS and blocked with CellGenix GMP DC Medium containing 10% of ABS at least 30 min before use. For co-culture, 1 × 10^4 responder CD8+ T cells for detection of CD8+ T-cell responses were co-cultured with 5 × 10^3 stimulator autologous BMDCs. Responder CD8+ T cells were educated by iPSDCs-neoantigen peptide or iPSDCs-CTOS ivtRNA. Autologous PBMCs were generated using the plastic adherence method, as described previously34 (link) and then pulsed with the respective neoantigen peptides (20 μg/ ml). After that, they were directly added to the ELISpot wells and incubated with responder CD8+ T cells overnight in DC Medium containing 10% of ABS at 37 °C. The mAb CD3-2 was used as a positive control. After 24 h of co-culture, cells were removed from the plate, washed five times with PBS, and then diluted with anti-human IFN-γ mAb (7-B6-1-Biotin, Mabtech) 1:200 in filtered PBS containing 0.5% ABS. After rinsing, TMB substrate solution was used to develop the immunospots. Spots were captured and analyzed by an automated ELISpot reader, ImmunoSpot S4 Software package, Version 6.0.0.2 (Cellular Technology Limited).
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6

SARS-CoV-2 Peptide Stimulation Assay

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PepMix pools containing 15-mer peptides overlapping by 10 amino acids from either SARS-CoV-2 spike S1 or S2, N/M/E protein domains were purchased from Alta Biosciences (University of Birmingham). T cell responses of postvaccination samples to the above peptide mixes were determined using a Human IFN-γ ELISpot PRO kit (Mabtech). Isolated PBMCs were thawed and rested overnight before assay in R10 (RPMI 1640 + 10% FCS + penicillin/streptomycin). Then, 2–3 × 105 PBMCs were stimulated in duplicate with peptide mixes at 1 μg ml−1 per peptide, anti-CD3 and CEFX cell stimulation mix (JPT) as a positive control or DMSO as a negative control for 16–18 h. Supernatants were collected and stored at −80 °C. After the development of plates according to the manufacturer’s instructions, plates were read using the BIOSYS Bioreader 5000. Mean spot counts in DMSO-treated negative control wells were deducted from the means to generate normalized spot counts for all other treated wells. Cutoff values were determined previously14 (link).
Cytokine concentrations in the ELISpot supernatants were assayed using a LEGENDplex Human Th Panel (BioLegend) according to the manufacturer’s instructions. Data were analyzed using the LEGENDplex Data Analysis Software Suite (BioLegend).
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7

T Cell Activation Assay Protocol

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ELISpot assays were performed by incubating 20,000–100,000 T
cells with 200,000 autologous B cells pulsed with 20 μg/ml of each
peptide in CTL medium overnight using the human IFNγ ELISpot-Pro kit
(Mabtech) according to the manufacturer’s instructions.
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8

T Cell Functional Assays

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Interferon (IFN)-γ secretion of T cells were detected by ELISPOT using Human IFN-γ ELISpotPRO kit (MABTECH, Catalog number 3420-2APW-10) according to the manufacturer’s instruction. Briefly, APCs (C1R-A24 or C1R-A02 cells) were pulsed with each respective peptide before co-culture for 16 h at 37°C, 5% CO2. T cells were pre-treated with IL-2 (35 U/mL) for 16 h and then co-cultured with the peptide-pulsed APCs (2 × 104 APCs and 5 × 104 engineered T cells/well) at 37°C for 20 h in 96-well plate. Spots were captured and analyzed by an automated ELISPOT reader, ImmunoSPOT S4 (Cellular Technology Ltd, Shaker Heights, OH) and the ImmunoSpot Professional Software package, Version 5.1 (Cellular Technology Ltd).
OptEIA Human IFN-γ ELISA set, OptEIA Human IL2 ELISA set, OptEIA Human TNFα ELISA set (BD Biosciences, Catalog number 555142, 555190, 555212) were used to measure the secreted IFN-γ, IL2, and TNFα levels in the supernatant of co-cultured engineered T cells and APCs. Briefly, APCs were pulsed with respective peptides at 37°C for 16 h and 5% CO2. T cells were pre-treated with IL-2 (35 U/mL) for 16 h and then cocultured with the peptide-pulsed APCs (2 × 104 cells/well) at 37°C for 20 h in a 96-well plate. The supernatant was transferred into another 96-well plate, and the concentration of each protein was measured according to the manufacturer’s instruction.
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9

Antibody and Cell-Mediated Immunogenicity Assessment

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Blood samples for antibody-mediated immunogenicity assessments were collected on day 1 and months 1, 3, 6, 7, 12, and 18. Outcomes included nAb titers against epithelial cell infection and against fibroblast infection, and binding IgG titers against the gB antigen and against the pentamer antigen. Cell-based neutralizing assays were used to measure nAb titers (Supplementary Methods). Binding IgG titers were measured by enzyme-linked immunosorbent assay (Supplementary Methods).
Blood samples were collected on days 1, 63, 175, and 337 (month 12) for cell-mediated immunogenicity. Outcomes included number of antigen-specific T cells secreting interferon gamma (IFN-γ) reported as spot-forming cells/10 6 peripheral blood mononuclear cells, as determined by enzyme-linked immunospot assay (ELISpot) using the Human IFN-γ ELISpot PRO Kit (Mabtech) and glycoprotein H (gH) and gB peptide pools (Genscript).
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10

Quantifying IFN-γ+ T cells induced by TB vaccines

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The numbers of IFN-γ+ T lymphocytes induced by the PP19128R vaccine and our previously developed TB vaccine HP13138PB [49 (link)] were determined using an ELISpot assay. First, a 5 mL blood sample was collected from HCs (n = 21), LTBI individuals (n = 25), and ATB patients (n = 19). PBMCs were separated from the blood sample using a human lymphocyte separation medium (Solarbio, Beijing, China, Cat: P8610) according to the manufacturer’s instructions. Then, 2.5 × 105 PBMCs in 100 μL GIBCO AIM-V medium (Life Technology Invitrogen, California, USA, Cat. No. 087-0112DK) were added to one well of a 96-well ELISpot culture plate and incubated with 50 μL PP19128R or HP13138PB vaccine (100 μg/mL) or 50 μL AIM-V medium (negative control) in a CO2 incubator at 37 °C for 24 h. The number of spot-forming cells (SFCs) was detected using a Human IFN-γ ELISpot PRO kit (Mabtech AB, Nacka Strand, Sweden, Cat. No. 3420-2APW-10) according to the manufacturer’s instructions.
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