The largest database of trusted experimental protocols

46 protocols using nanowizard 4

1

Characterization of Carbon Dots

Check if the same lab product or an alternative is used in the 5 most similar protocols
The annealed films were removed from the surface and dissolved with 2 ml H2O in Eppendorf tubes. After centrifuging at 9,391g (10,000 r.p.m.) for 10 min, the supernatant was filtered through a 0.45 µm hydrophilic filter (CHROMAFIL Xtra, 13 mm). The obtained solution was used for the following characterizations. Ultraviolet–visible spectra were recorded with a UV-1900 spectrometer (Shimadzu). Fluorescence spectra of CDs were measured using a microplate reader (SpectraMax M5, Molecular Devices). Mass spectra were recorded using an HPLC-System Series 1100 coupled with ESI-single quadrupole from Agilent. NMR spectra were obtained on an AscendTM 400 spectrometer (400 MHz, Bruker) at 298 K, and are reported in ppm relative to the residual solvent peaks. For 1H and 13C spectra, the films were directly dissolved in 600 µl D2O (Sigma) before centrifugation and filtration. The TEM study was performed using a double Cs corrected JEOL JEM-ARM200F (scanning) transmission electron microscope operated at 80 kV and equipped with a cold-field emission gun. Annular dark-field scanning transmission electron microscopy images were collected at a probe convergence semi-angle of 25 mrad. Atomic force microscopy measurements were recorded with a JPK Bruker NanoWizard4 instrument in a.c. (tapping) mode.
+ Open protocol
+ Expand
2

AFM Imaging of Supported Lipid Bilayers

Check if the same lab product or an alternative is used in the 5 most similar protocols
AFM imaging of supported lipid bilayer membranes was performed using a Nano Wizard 4 (JPK, Bruker) operated in alternating contact mode. Ultrashort cantilevers (USC-F0.3-k0.3, Nano World) with a nominal spring constant of 0.35 Nm−1 and a probe radius of 10 nm (according to manufacture specifications) were used. Scanning was performed using the smallest possible contact force to minimize potential membrane deformation. Samples were imaged in 0, 7, 15, and 30 μM TFP solutions prepared in 10 mM TRIS buffer (2-Amino-2-(hydroxymethyl)propane-1,3-diol), 140 mM NaCl, 2 mM Ca2+, pH = 7.4, after allowing 10 min equilibration time for each concentration change. Three images at different locations on the sample were taken per condition. Processing of AFM images was done with both Gwyddion (Czech Metrology Institute) and JPK Data Processing software (JPK, Bruker). Ten lines (five pixels thick) were drawn across SLB/hole edges in SLBs in each image and viewed as cross sections for the determination of SLB height.
+ Open protocol
+ Expand
3

Quantitative Nanomechanical Characterization

Check if the same lab product or an alternative is used in the 5 most similar protocols
AFM images were obtained on a Bruker/JPK NanoWizard 4 operating in Quantitative Imaging (QI) mode. In this mode, force spectra were collected at every point in a given image area, from which several nanomechanical parameters such as height, stiffness, and adhesion were extracted. The height was estimated from a setpoint force chosen during the experiment, while the stiffness was estimated as the slope of the approach curve. The images were obtained using Nanosensors PPP-NCH probes.
+ Open protocol
+ Expand
4

Measuring Cell Cytoskeletal Stiffness via AFM

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cell stiffness was analysed with AFM nanoindentation using a Nanowizard 4 (Bruker, Coventry, UK) in contact – force spectroscopy mode. Nanoindentation measurements were carried out with an MLCT silicon nitride probe (Bruker) with a nominal spring constant of 0.03 nN/m with a 15 µm polystyrene bead attached to the tip. Prior to cell analysis, the sensitivity of the probe was calibrated by measuring the force–distance slope in the AFM software on an empty petri dish region. Nanoindentation of individual cells was conducted at 5 µm/s to a set point of 1 V (~1 nN force set point). Cells were indented at a point between the nucleus and the cell periphery to characterise the cytoskeletal stiffness. The stiffness (Young’s modulus) of individual cells was calculated from the force-distance curves using the AFM software with the Hertz model [36 (link)].
+ Open protocol
+ Expand
5

Fractured Bond Imaging by AFM

Check if the same lab product or an alternative is used in the 5 most similar protocols
The same procedure used to produce the lap shear specimens was used to prepare fractured bonds for AFM imaging. However, these samples were fractured out of plane after an additional drying step at 50 °C for at least 30 min to increase brittleness and result in clean fractures. Images of C-EISA samples were obtained using the QI-Nano mode on a Nanowizard 4 (Bruker, Germany) AFM using a cantilever with an 8 nm radius spherical tip (nominal spring constant of 40 N m−1 and a resonance frequency of ca. 260 kHz). The deflection was set at 10 nN, with 100 nm approach and retract distances.
+ Open protocol
+ Expand
6

Atomic Force Microscopy of Biosilica Costae

Check if the same lab product or an alternative is used in the 5 most similar protocols
Isolated biosilica was immobilized on a poly-l-lysine-coated glass specimen holder by incubation for 1 h at room temperature. The AFM measurements were carried out on a Nanowizard IV (JPK Instruments) utilizing the QITM measurement mode with a trigger force of 200 pN. Biolever Mini (BL-AC40-TS, Olympus Micro) was used as cantilevers for the measurements. Calibration of the cantilevers was done by the contact-free method according to the manufacturer’s instructions. Image correction and flattening were performed within the JPK data processing software (JPK Instruments). The height of the costae was calculated using the “Extract profile” tool of the program Gwyddion. For this purpose, a line of at least 100 nm was drawn on top of a costa and in the valley next to this costa to calculate their average height profile. The net height of a costa was calculated by subtracting the average height of the valley from the average height of its neighboring costa.
+ Open protocol
+ Expand
7

Single-Molecule Force Spectroscopy of Bacteria

Check if the same lab product or an alternative is used in the 5 most similar protocols
For SMFS experiments, cantilevers (k ∼ 0.02 N m−1) were prepared as described above and bacteria were immobilized on polystyrene substrates. SMFS measurements were performed at room temperature in PBS buffer with a NanoWizard IV atomic force microscope (JPK Instruments). Adhesion maps were obtained by recording 32 × 32 force–distance curves on areas of 500 by 500 nm2 with an applied force of 250 pN, a constant approach and retraction speed of 1 μm s−1 and a contact time of 500 ms. SMFS data were processed and analyzed the same was as for SCFS experiments.
+ Open protocol
+ Expand
8

Atomic Force Microscopy Characterization of Implant Materials

Check if the same lab product or an alternative is used in the 5 most similar protocols
Atomic force microscopy (AFM) images of implant materials were acquired using a JPK NanoWizard IV (Berlin, Germany) integrated with an up-right microscope (JPK “TopViewOptics” with Navitar long working distance zoom lens). Measurements were performed in ambient conditions and in intermittent contact mode, or AC mode, using uncoated silicon ACL cantilevers from AppNano (Mountain View, CA, USA) with typical resonance frequencies of 160–225 kHz, a spring constant of 36—90 N/m and average nominal tip radius of 6 nm. Scan speeds ranged between 0.2 and 0.4 Hz and total scan areas of 100 μm×100 μm were imaged per measurement to obtain surface parameters. Scans of 5 μm×5 μm were taken to obtain more detailed images of implant material and biofilm surfaces. Images were made at 5 random locations per disk for a total of N = 15 images per material and per timepoint. Surface roughness (Ra) in nm, as well as peak-to-valley roughness (Rt) or total height difference in nm were determined (Box 1). The captured images were processed using JPKSPM Data Processing software version 6.1.191 (JPK BioAFM, Bruker Nano GmbH, Berlin, Germany).
+ Open protocol
+ Expand
9

Nanomechanical Profiling of Liver Organoids

Check if the same lab product or an alternative is used in the 5 most similar protocols
HLO treated with 0, 200, 400, 800 μM OA were used for stiffness measurement with an AFM (NanoWizard IV, JPK Instruments). The AFM head with a silicon nitride cantilever (CSC37, k = 0.3 N/m, MikroMasch) was mounted on a fluorescence stereo microscope (M205 FA, Leica) coupled with a Z-axis piezo stage (JPK CellHesion module, JPK Instruments), which allows the indentation measurement up to the depth of ~ 100 μm. As a substrate for organoids, a fibronectin-coated dish was used. The tissue culture dish (φ = 34 mm, TPP Techno Plastic Products) was first incubated with a 1 μg/mL fibronectin solution (Sigma) at 4 °C for overnight. Then, the tissue culture dish was washed twice by distilled water and dried for 1 hour. Thereafter, HLO incubated with OA for 5 days were deposited to the fibronectin-coated dish and incubated for 1 hour at 37 °C. The sample dish was then placed onto the AFM stage, and force-distance curves in a 14×14 matrix in a 25×25 μm square were measured from each HLO. Due to technical issues for fixing the position of the FGF19-treated Wolman iPSC-sHLO, Figure4G assessed healthy PSC-sHLO to enhance the robustness. Finally, Young’s moduli (E, Pa) of organoids were determined by fitting the obtained force-distance curves with the modified Hertz model (Sneddon, 1965). Post hoc analysis was carried out by Dunn-Holland-Wolfe test for significance test.
+ Open protocol
+ Expand
10

Topographic and Elastic Analysis of Surfaces via AFM

Check if the same lab product or an alternative is used in the 5 most similar protocols
Atomic force microscopy (AFM, Nanowizard IV, JPK-Instruments, Berlin) in Quantitative Imaging Mode (QI) was performed to investigate the surface roughness and topography. Topographical images were recorded using silicon cantilever (qp-BioT, Nanosensors) in a standard liquid cell (JPK-Instruments) containing distilled water. A force map area of 5 × 5 μm2 was recorded with a resolution of 512 × 512 pi2 (pixel). Roughness analysis and calculation of the elasticity were performed using the software JKP Data Processing V5.0.85 and Gwyddion (Gwyddion V2.49, 64-bit).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!