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16 protocols using p3000mp

1

Viral Transduction and Calcium Imaging in Mouse Brain

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Male and female wild‐type C57BL/6Crl mice aged between 21 and 40 days were anesthetized with isoflurane, mounted in a stereotaxic frame, and a small craniotomy made above the target region. To achieve sparse labelling, a mixture of pENN‐AAV‐hSyn‐Cre‐WPRE‐hGH (Addgene # 105553‐AAV1) (titer ≥ 2 × 109 vg mL−1) and pAAV‐hsyn‐flex‐Voltron‐ST (Addgene # 119036‐AAV1) (titer ≥ 1 × 10¹2 vg mL−1) injected into the primary visual cortex (stereotaxic coordinates AP −3.8, ML 3.0, DV −0.3, and −0.6) and CA1 (AP −3.8, ML 3.0, DV −1.3). Injection coordinates were calculated relative to bregma and 200 nL of the virus mixture was injected at each coordinate. JF525‐HTL (100 nMol, Lavis Lab, Janelia Research Campus, HHMI) was mixed with 20 µL of DMSO (Sigma, D2650‐5 × 5 ML), 20 µL of Pluronic F‐127 (20% Solution in DMSO) (ThermoFischer Scientific P3000MP) and 80 µL of 1x PBS and administered intravenously into the lateral tail vein of mice 24–72 h prior to experimentation.
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2

Neurospheroid Calcium Imaging Protocol

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SHSY 5Y cells cultured as neurospheroids or monolayers on a Matek plate were loaded with 4 µM fluo-4 (F14201, Molecular Probes, Thermo Fisher Scientific, Waltham, MA USA), 0.01% Pluronic F-127 (P3000MP, Thermo Fisher Scientific,), and 1% probenecid (P36400, Molecular Probes, Thermo Fisher Scientific) in 2 mL of Hank's balance salt solution (HBSS) and incubated for 1 h at 37 °C. The cells were incubated in HBSS with 1% probenecid for 45 min. Cellular calcium data were acquired by laser scanning microscopy through a 20× objective of an inverted microscope (Nikon Eclipse TE300) through a 505 nm long pass filter of a 488 nm confocal laser scanning unit. The images were acquired using SimplePCI (PCM 2000) software at a rate of 1.37 ± 2 frames per second.
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3

Intracellular Ca2+ and IP3 Signaling Assay

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Cells were incubated with 5 μM of the membrane-permeant fluorescent Ca2+ indicator Cal520-AM (AAT Bioquest #21130; Sunnyvale, CA) for 1 hr at room temperature in a Ca2+-containing HEPES buffered salt solution (Ca2+-HBSS) together with 5 μM of the membrane-permeant ester of the caged IP3 analogue ci-IP3-PM (D-2,3,-O-Isopropylidene-6-O-(2-nitro-4,5 dimethoxy) benzyl-myo-Inositol 1,4,5,-trisphosphate hexakis (propionoxymethyl) ester) (SiChem #cag-iso-2–145-10; Bremen, Germany). In some experiments cells were additionally loaded by incubation with EGTA-AM (15 μM; Thermo Fisher Scientific #E1219) for a further 1 hr at room temperature in Ca2+-HBSS. Following loading, cells were maintained for 30 min at room temperature in Ca2+-HBSS before imaging. Cal520-AM, ci-IP3-PM, and EGTA-AM were all solubilized with DMSO/20% pluronic F127 (ThermoFisher #P3000MP). Ca2+-HBSS contained (in mM) 135 NaCl, 5.4 KCl, 2 CaCl2, 1 MgCl2, 10 HEPES, and 10 glucose (pH=7.4). Zero Ca2+-HBSS consisted of the same formulation with CaCl2 omitted, and 300 μM EGTA added. The receptor agonists carbachol (#C4832) and histamine (#H7125) were purchased from Millipore Sigma and solubilized in zero Ca2+-HBSS.
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4

Tracking Intracellular Calcium Dynamics

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We tracked spreading cells by internal reflection microscopy (IRM) and used a Ca2+-specific fluorescent probe (Fluo4-AM, Molecular Probes F14217) to detect variations of Ca2+ levels with epifluorescence. The Fluo-4-AM Ca2+ dye was dissolved in DMSO at 5 mM (1000X) and Pluronic (Molecular Probes P3000MP) was added at 50 mg/ml to aid the solubilization of the dye into aqueous buffers. Cells were pelleted by centrifuging at 200 x g (1,250 rpm) for 5 min at 4˚C, and the pellet was resuspended in 1 ml HBS/1%HSA. The freshly made Fluo-4/DMSO/Pluronic solution was added to the cell suspension to achieve a 5 µM final Fluo4-AM concentration, and incubated 30 min at room temperature, to allow efficient uptake and de-esterification of the AM esters from the dye. Finally, cells were washed with PBS, pelleted, and resuspended in phenol free HBS/1%HSA. As a measurement of the relative changes in free intracellular Ca2+, raw values of total fluorescence intensity for each cell were background corrected and normalized to the maximum intracellular Ca2+ release measured after addition to the medium of ionomycin (1 µM), an ionophore that releases Ca2+ from intracellular stores. The acquisition rate was 16 frames/min for the long term acquisition.
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5

Intracellular Calcium Dynamics Imaging

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We tracked spreading cells by internal reflection microscopy and used a Ca2+‐specific fluorescent probe (Fluo‐4‐AM, Molecular Probes, Eugene, OR, USA, F14217) to detect variations of Ca2+ levels with epifluorescence. The Fluo‐4‐AM Ca2+ dye was dissolved in DMSO at 5 mm (× 1000) and Pluronic (Molecular Probes P3000MP) was added at 50 mg ml−1 to aid the solubilization of the dye into aqueous buffers. Cells were pelleted by centrifuging at 200 g (1250 r.p.m.) for 5 min at 4 °C, and the pellet was resuspended in 1 ml Hepes buffered saline supplemented with 5 mm glucose, 2 mm MgCl2, 1 mm CaCl2, and 1% human serum albumin (HBS/HSA). The freshly made Fluo‐4/DMSO/Pluronic solution was added to the cell suspension to achieve a 5 μm final Fluo‐4‐AM concentration, and incubated 30 min at room temperature, to allow efficient uptake and de‐esterification of the AM esters from the dye. Finally, cells were washed with phosphate‐buffered saline, pelleted and resuspended in phenol free HBS/1%HSA. As a measurement of the relative changes in free intracellular Ca2+, raw values of total fluorescence intensity for each cell were background‐corrected and normalized to the maximum intracellular Ca2+ release measured after addition to the medium of ionomycin (1 μm), an ionophore that releases Ca2+ from intracellular stores. The acquisition rate was 16 frames min−1 for the long term acquisition.
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6

Measuring Astrocyte-Müller Cell Calcium Signaling

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Co-cultured astrocytes and Müller cells were loaded for 45 min at 37°C under gentle agitation with 2, 5 µM of Fura-2 acetoxymethylester (Fura-2AM, Molecular Probes, United States) in a modified Hanks buffered saline solution (HBSS: 135 mM NaCl, 5 mM KCl, 1.3 mM CaCl2, 1 mM MgCl2, 10 mM HEPES, 2.5 D-glucose, and pH 7.4) supplemented with 0.002% pluronic acid (P3000MP, Molecular Probes, United States). After incubation, glass plates covered with cells were mounted in a thermostatically regulated microscope chamber on an inverted Olympus microscope (IX 70, Olympus Corporation, Japan) and visualized with a 20X objective. Intercellular calcium waves were induced by the application of 100 µM ATP onto a single Müller cell with an 8.4-µm glass micropipette. Two 100 msec-pulses at 10 psi were delivered with a pneumatic PicoPump (PV830, World Precision Instruments, United States). A real-time movie of intercellular calcium waves of stimulated Müller cell and neighboring astrocytes following stimulation was recorded at 2 Hz for 4 min by alternating excitations at 340 and 380 nm (emission spectrum: 420–600 nm). Images were recorded using a CCD camera with the live acquisition software (TiLL photonics, United States). The 340/380 nm fluorescence ratio was calculated after correction for background fluorescence values. A baseline recording was performed for 2 min before stimulation.
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7

Intracellular pH Measurement and NBC Activity

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A549 cells were attached onto coverslips and loaded with 6 μM 2′,7′-Bis-(2-carboxyethyl)-5-(and-6)-carboxyfluorescein (BCECF-AM, 0061, TEFlabs) along with the same volume of 0.05% pluronic acid (P-3000MP, Invitrogen) for 15 min at room temperature (RT) in the dark. After incubation with the BCECF, the A549 cells were placed on the inverted microscope and perfused with physiological salt solution, as previously described (Ji et al., 2017 (link)), for at least 5 min prior to determining the intracellular pH (pHi). pHi was determined by measuring BCECF fluorescence using dual excitation wavelengths (495 and 440 nm) and an emission wavelength (530 nm). NBC activity was measured by incubating the cells with a CO2-saturated bicarbonate-buffered as described previously (Ji et al., 2017 (link)) containing sodium hydrogen exchanger inhibitor 5-(N-ethyl-N-isopropyl)-amiloride (EIPA, 1154-25-2, Sigma Aldrich), followed by acidification with Na+-free bicarbonate-buffered medium. Images were obtained with a CCD camera (Q-Imaging) and analyzed with a Meta Fluor system (Molecular Devices). The images were individually normalized by subtracting the background fluorescence signal from the raw background signals.
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8

Measuring Planaria pH Homeostasis

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Planaria, ≤6 mm in length, immobilized by either PC2-RNA interference (by dsRNA) (RNAi) [16 (link)]
  or low percent ethanol (EtOH) [19 (link)]
  See Steps 1–3
Planarian water, species appropriate [16 (link)]
SNARF-5F-AM (Molecular Probes S-23923, special packaging of 50 μg aliquots)
  Keep at −20°C in the dark.
Pluronic F-127, 20% in Dimethyl Sulfoxide (DMSO) (Invitrogen P-3000MP)
Carbonyl cyanide 3-chlorophenylhydrazone (CCCP) protonophore (Sigma C2759)
  Keep as 10 mM stock in DMSO at 4°C in dark.
2-(Cyclohexylamino)ethanesulfonic acid (CHES) buffer (Sigma C2885)
Sodium acetate (NaOAc) buffer (Sigma S2889)
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9

Intracellular pH Measurement in Cells

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Cells were attached onto coverslips one day before and loaded in the chamber with 4 μM BCECF-AM (2′,7′-bis-(carboxyethyl)-5-(and-6)-carboxyfluorescein, 0061, TEFlabs Inc, Austin, TX, USA) in the presence of same volume of 0.05% pluronic acid (P-3000MP, Invitrogen, Carlsbad, CA, USA) for 15 min at RT. After incubation of the fluorescence dye, the cells were perfused with regular solution, as previously described [24 (link)], for at least 5 min prior to intracellular pH (pHi) measurements. The pHi was measured by BCECF fluorescence using dual excitation wavelengths of 495 and 440 nm and emission wavelength of 530 nm. The cells were incubated with CO2-saturated HCO3 solution for the acidification of the cytosol, and then, perfused with Cl-free HCO3 solution. All incubated solutions were maintained at 37°C. Cl-HCO3 exchanger (CBE) activity of AE2 was calculated from the slope of increase in pHi during the first 30-45 sec in Cl-free HCO3 solution and expressed as the percent fold change relative to that of CBE activity of control. Fluorescence images were obtained with Retiga 6000 CCD camera (Q-Imaging) recruited to an inverted microscope (Olympus, Tokyo, Japan) and analyzed with a Meta Fluor system (Molecular Devices, San Jose, CA, USA). Each image was analyzed after the removal of the background fluorescence.
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10

Fluo-4 Imaging of Ca2+ Signaling

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Cells were incubated in 2 mM Ca2+ Ringer’s solution containing 5 μM Fluo-4 AM (F14201; Invitrogen) and 0.1% pluronic acid (P3000MP; Invitrogen) to permeabilize cells at 21°C for 30 min, followed by deesterification in Fluo-4-free Ringer’s solution for 30 min. Cells were bathed in 2 mM Ca2+ Ringer’s solution and excited by a 488 nm laser and the resulting fluorescence was monitored using an inverted microscope with a Plan-Apochromat 40×/1.40 oil objective, connected to an Andor W1 spinning-disk confocal with a Photometrics Prime 95B camera. Image acquisition occurred at 21°C every 5 s using Micromanager software. At 100 s, cells were perfused with 100 μM UTP or bradykinin in 2 mM Ca2+ Ringer’s solution for 100 s. At 200 s, cells were perfused with 2 mM Ca2+ Ringer’s solution without Gq agonist and imaged until 400 s. Images stacks were analyzed in ImageJ. An ROI was drawn in the cytosol of Fluo-4-loaded cells and measured for fluorescence. Intensity was normalized to minimum intensity value before Gq agonist application. Amplitude and area under the curve measurements were made by GraphPad Prism.
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