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Panreac

Manufactured by AppliChem
Sourced in Germany, Spain

Panreac is a line of laboratory equipment and reagents manufactured by AppliChem. It provides a range of products for use in scientific research and analytical applications. The core function of Panreac equipment is to facilitate the precise and reliable performance of various laboratory procedures.

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29 protocols using panreac

1

Bacillus thuringiensis Spore Purification

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Spores were purified as described by [57 (link)] with some modifications. An overnight culture of B. thuringiensis in 4 ml of TSB was grown at 37°C, 180 r.p.m. The overnight culture was diluted 1:100 in 50 ml fresh TSB media containing 0.1 mmol MnSO4 (PanReac, AppliChem) and grown at 37°C, 180 r.p.m. for 10 days. Cultures were transferred to a 50 ml falcon tube and stored on ice for 20 min. The tubes were spun down at 4°C, 10 000 r.p.m. for 10 min. The pellet was suspended in 20 ml of 50 mM Tris–HCL (pH 7.2; PanReac, AppliChem) with an addition of 50 µg ml−1 lysozyme (from hen egg whites, Fluka). Samples were incubated at 37°C, 180 r.p.m. for 1 h. The sample was spun down at 4°C, 10 000 r.p.m. for 10 min, and the pellet was suspended in cold sterile water. This washing step was repeated twice. The pellet was then suspended in 5 ml 0.05% SDS solution (Sigma, D6750-10G) by vortexing and incubated for 5 min at room temperature. The sample was then spun down at 4°C, 10 000 r.p.m. for 10 min, and the pellet was suspended in cold sterile water. This washing step was repeated five times. After the final washing step, the pellet was suspended in 5 ml of cold, sterile water and stored at 4°C for later use. Spores were counted using a Neubauer-improved chamber (Paul Marienfeld GmbH, Lauda-Konigshofen, Germany) with a chamber depth of 0.1 mm.
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2

Cation-mediated Gelation of Exopolysaccharides

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The gel forming capacity of the EPS was tested by preparation of cation-mediated gels using divalent cations (FeSO4·7H2O, Honeywell Fluka, Seelze, Germany, CuSO4·5H2O, AppliChem Panreac, Barcelona, Spain, CaCl2·2H2O, AppliChem Panreac, Barcelona, Spain, and MgSO4·7H2O, BioChem Chemopharma, Cosne sur Loire, France) and a trivalent cation (FeCl3·6H2O, Alfa Aesar, ThermoFisher, Kandel, Germany). The gelation studies were performed according to the procedure described by Shimada et al. [53 (link)], with minor modifications: 5 mL of EPS solution (5 g L−1) was added to the metal salt (10 mg of cation) and agitated until dissolution and gel formation was assessed (standard conditions). Afterwards, 1 mL of NaOH (2 M) was added and the solution was agitated to test gelation in alkaline conditions. Gel formation was assessed by visual inspection, and the gels were categorized according to their strength and homogeneity: (+) for homogeneous gels that maintained their gel structure in a tube-inversion test, (-) for homogeneous gels that did not sustain their structure in the inversion test, and (--) for small non-homogeneous gels.
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3

Fungal Bioremediation of Organic Pollutants

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The compounds 1-amonibenzothiazole (ABT, 97% purity), 2,2′- azinobis (3-ethylbenzothiazoline-6-sulfonic acid) (ABTS, 98% purity), phenanthrene (PHE, 98% purity), and benz[a]anthracene (BAA, 98% purity) were purchased from Sigma (St. Louis, MO, USA). Copper sulphate and zinc, lead, and silver nitrate metal salts were acquired from Merck (Madrid, Spain). All solvents used were of HPLC grade: acetonitrile (PanReac, AppliChem, Barcelona, Spain), HPLC water (PanReac, AppliChem, Barcelona, Spain), and phosphoric acid (Fisher Chemical, Madrid, Spain). All other chemicals and reagents were of analytical grade or higher purity.
The used fungi were Chaetomium jodhpurense (MH667651.1), Chaetomium maderasense (MH665977.1), Paraconiothyrium variabile (MH667653.1), Emmia lacerata, and Phoma betae (MH667655.1), previously isolated from a salt environment in Tunisia and molecularly identified [19 ]. The fungal genera Chaetomium, Paraconiothyrium, Phoma, belonging to Ascomycota, were known by their large application in bioremediation due to their great ability to produce extracellular enzymes [20 (link),21 (link),22 (link)]. The strain Emmia lacerate is a Basidiomycota belonging to polypore species. As a white rot fungus it can produce a large wide of extracellular enzymes [23 (link)].
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4

Immunohistochemical Staining Protocol

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Acetone-fixed 4-µm-thick sections of cell micromasses were rinsed twice with PBS and non-specific endogenous peroxidase activity was quenched with a 3% (v/v) hydrogen peroxidase (H2O2) solution (Roche) for 10 min. The samples were washed twice with PBS and primary antibody was applied for 1 h at RT. The slides were then washed three times with PBS and incubated with OptiView HQ Universal Linker (Roche) for 10 min at RT. After three additional washes with PBS, the slides were incubated with OptiView HRP Multimer (Roche) for 8 min at RT. After two more washes with PBS, peroxidase activity was developed using a 0.02% H2O2 and 0.1% DAB solution. The sections were then washed in distilled water and, in some cases, counterstained with Gill’s hematoxylin (Merck Millipore). As a final step, the slides were gradually dehydrated with alcohol, cleared with xylene (PanReac AppliChem) and mounted with DePeX (BDH Gun®, VWR).
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5

Electrospun PCL Scaffolds for Research

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Poly(ε-caprolactone) (PCL) and acetone were chosen as biopolymer and non-toxic solvent respectively, to manufacture the scaffolds. PCL 3 mm pellets with an average molecular weight of 80,000 g/mol (Sigma-Aldrich, St. Louis, MO, USA) were dissolved in acetone (PanReac AppliChem, Gatersleben, Germany). Two different concentrations of 7.5 and 15% w/v PCL were achieved under 40 °C and agitation using a magnetic stirrer. Scaffolds were fabricated with an electrospinning instrument (Spraybase, Dublin, Ireland). PCL solution was placed in a plastic syringe (BD Plastipak, Franklin Lakes, NJ, USA) connected to an 18 G needle emitter with an inner diameter of 0.8 mm. A fixed voltage of 7 kV was applied and a flow rate of 6 mL/h was established by the Syringe Pump Pro software (New Era Pump Systems, Farmingdale, NY, USA). The distance between the emitter and stationary collector was 15 cm. The electrospinning process was stopped when 10 or 5 mL of solution were ejected, for 7.5 and 15% PCL concentrations respectively. The meshes were then cut into squares with a scalpel.
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6

Tick-borne Bacteria Isolation Procedure

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Ticks were washed with 70% ethanol and rinsed 3 times with phosphate-buffered saline (PBS) (PanReac, AppliChem). Tick's exoskeletons were removed using sterile forceps and blades, and the internal organs were cut into small pieces and then transferred into tubes. Each tick was homogenized individually with PBS using an electric homogenizer. Each homogenate was inoculated into 3 ml of nutrient broth media (VWR Chemicals, USA) in a 15 ml tube and incubated for 24 h at 37°C with shaking (250 rpm) (10 (link), 22 (link)). The growing cultures were plated into different media, including blood agar base (VWR Chemicals, USA) and MacConkey agar (OXOID, UK) to allow the growth of a large spectrum of bacteria (23 ). After 24 h of incubation at 37°C, different colonies (1–2 colonies from each plate) were selected based on morphology (color, structure, shape, size). The bacterial isolates were stored with glycerol at −80°C for further analysis.
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7

Visualizing Mitochondrial Morphology in Cells Expressing DJ-1 Variants

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Cells transiently transfected with wt and mutant DJ-1 were cultured on poly-D-lysine glass coverslips (24Ø) for 24 h. After administration of CCCP 10 μM for 8 h, cells were washed twice in cold PBS (pH 7.4) and fixed in 4% (w/v) paraformaldehyde for 20 min at RT. Following three washes in PBS, cells were permeabilized with 0.1% Triton-X100 (AppliChem PanReac) for 10 min at RT and blocked with 3% (w/v) bovine serum albumin for 1 h at RT. All coverslips were then incubated with primary antibodies (goat polyclonal anti-DJBP at 0.4 μg/ml, Santa Cruz) and rabbit polyclonal anti-ATPβ at 1 μg/ml (Abcam) at 4°C overnight. Following three washes in PBS, coverslips were incubated in the dark with a mix of the following secondary antibodies AlexaFluor 594-conjugated anti-goat IgG and AlexaFluor 488-conjugated anti-rabbit IgG (Invitrogen) at 1:100 for 1 h at RT. After a final wash, coverslips were mounted with ProLong Gold antifade reagent (Invitrogen) containing DAPI (Applichem), for nuclei visualization, and imaged by means of an Olympus Fluoview 1000 Confocal Laser Scanning System. All images were analyzed by ImageJ software (NIH, Bethesda, MD, United States).
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8

Cultivation of Oral Streptococcal Strains

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The strains included in this study were Streptococcus mutans ATCC 25175 and Streptococcus sanguinis ATCC 10556 (American Type Culture Collection). Bacteria were inoculated on Brain Heart Infusion Agar plates (BHA; OXOID, Ltd., Basingstoke, Hampshire, UK), and cultivated from independent colonies in tubes with 5 mL of trypticase soy broth (TSB) enriched with 1% sucrose (Panreac, AppliChem GmbH Ottoweg, Darmstadt, Germany). These cultures were incubated in an atmosphere supplemented with 5% CO2 for 12–18 h at 37 °C. After incubation, the inoculum was adjusted to 82% of transmittance at 492 nm in a vertical spectrophotometer (Helios epsilon Model, Thermo spectronic, Waltham, MA, USA), and diluted 1/100 in enriched TSB to obtain a bacterial suspension of approximately 106 colony forming units per milliliter (CFU/mL).
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9

Quantification of Antioxidant Compounds

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The standard gallic acid (98.0%) was purchased from Vetec Químimca Fina (Rio de Janeiro, RJ, Brazil) ascorbic acid (99.7–100.5%), ferulic acid (>99%), allicin (S-Allyl 2-propene-1-sulfinothioate), diallyl disulfide (≥98%), and Trolox (≥98%) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Ethanol (99.8%), Folin–Ciocalteu reagent, sodium carbonate, 5, 5′-dithiobis (2-nitrobenzoic acid) (DTNB), sulfuric acid, sodium phosphate, 2, 2′-Azobis (2-methylpropionamidine) dihydrochloride (AAPH), 2, 2-Diphenyl-1-picrylhydrazyl (DPPH), and Hepes buffer were purchased from Sigma-Aldrich. Acetone (99.5%), anhydrous bibasic sodium phosphate (P.A.-A.C.S.), and monobasic sodium phosphate (P.A.-A.C.S.) were purchased from Êxodo científica (Hortolândia, SP, Brazil), ammonium molybdate and fluorescein from Synth (Diadema, SP, Brazil), and cysteine from Vetec Químimca Fina (Rio de Janeiro, RJ, Brazil). HPLC grade methanol was purchased from AppliChem Panreac®.
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10

Quantitative PCR Detection of Single-Spore Fungi

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DNA extracted from single-spore cultures was amplified with the primer/probe set developed in this study. The reaction mixture for each DNA sample, consisted of 3 μL of DNA template, 10 μL of Luna Universal Probe qPCR Master Mix (New England Biolabs, Ipswich, MA, USA), 500 nM of each of the forward and reverse primers, 250 nM of the probe, and 0.1 μL BSA (New England Biolabs, Ipswich, MA, USA) in a final volume of 20 μL. For each sample triplicate reactions were performed and molecular grade water (Panreac, AppliChem, Barcelona, Spain) was used as negative control. The RT-qPCR reactions were performed using a Strategene Mx3005P qPCR System (Agilent Technologies, Santa Clara, CA, USA) on 96-well plates. Amplification conditions consisted of a single cycle at 94 °C for 1 min, followed by 40 cycles of 94 °C for 30 s, 55 °C for 30 s, and 94 °C for 10 s. Data were collected in the last holding stage of each cycle and the results were analyzed using the Strategene MxPro-Mx3005P Software (Version 4.00; Agilent Technologies, Santa Clara, CA, USA).
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