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3 protocols using ab65804

1

Amyloid-β1–42 Aggregation and Neurotrophin Signaling

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Amyloid-β1–42 (Aβ1–42) was obtained from Sigma-Aldrich (St. Louis, MO, USA). Before injection, the Aβ1–42 peptide was dissolved in a physiological saline solution at a concentration of 5 mg/ml and incubated at 37°C for 72 h to induce aggregation. Human full length BDNF (ab9794), NGF (ab138794) and NT-3 (ab138798) proteins and their corresponding rabbit polyclonal antibodies (ab75040, ab6198 and ab65804) were purchased from Abcam (Cambridge, UK). Rabbit monoclonal antibodies against phospho-ERK (#4370), total ERK (#4695), phospho-JNK (#4668), total JNK (#9258), phospho-p38 (#4511), total p38 (#9212) and GAPDH (#5174) were from Cell Signaling Technology (Beverly, MA, USA). Ceramide C6, an ERK activator, was obtained from Santa Cruz Technology (Santa Cruz, CA, USA). The ERK inhibitor PD98059 was from Sigma-Aldrich (St. Louis, MO, USA).
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2

Temporal Bone Protein Analysis

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At days 0, 1, 3 and 7, animals were euthanized with a urethane intraperitoneal injection (1 g/kg), and both temporal bones were immediately removed. Two cochleae were homogenized in a tube containing ice-cold lysis buffer (100 mM Tris, pH 7.4, 200 mM NaCl, 1% NP-40, 10 mM MgCl2) with protease inhibitors. Western blotting was performed, as described previously.17 (link) In brief, lysates were centrifuged for 20 min at 13 000 r.p.m. at 4 °C; in addition, proteins in the supernatant were separated using 10% SDS-PAGE and transferred to polyvinylidene difluoride membranes. Blots were incubated overnight with the primary antibodies against 4-HNE (1 : 1000 dilution), BDNF (ab6201, 1 : 1000 dilution; Abcam) and NT-3 (ab65804, 1 : 1000 dilution; Abcam). After rinsing in TBST, the membranes were incubated with the HRP-conjugated secondary antibody (81–1620, A16104, G21040; 1 : 5000; Invitrogen) for 1 h. Bands were detected by chemiluminescence (LF-QC0103, Ab Frontier, Seoul, Korea). Further, blots were stripped and reprobed with actin (SC-1616, Santa Cruz Biotechnology), thereby serving as a protein loading control. Band intensities were quantified using the ImageJ software (NIH).
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3

Western Blot Analysis of Neural Markers

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For whole cell lysate extraction, NT2D1 cells were lysed in RIPA buffer (50 mM Tris-HCl pH 7.5, 150 mM NaCl, 0.1% SDS, 0.5% sodium deoxycholate, 1% NP-40, 1× protease inhibitor cocktail) for 10 min on ice and then centrifuged at 16,000×g for 15 min to remove debris. Total proteins from each sample were fractionated by SDS-PAGE and then transferred to a polyvinylidene difluoride (PVDF) membrane. Monoclonal antibodies that recognize POU3F2 (#12137, Cell signaling), POU3F3 (ab90727, Abcam), NTF3 (ab65804, Abcam), β3-Tubulin (ab18207, Abcam), and GAPDH (NB300-221, NOVUS) were used to detect the expressions of POU3F2, POU3F3, NTF3, β3-Tubulin, and GAPDH, respectively. Membranes were washed for 10 min in 0.1% TBS-Tween 20, incubated in HRP-conjugated secondary antibody for 1 h, washed again, and then analyzed with the GeneGnome chemiluminescence imaging system.
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