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8 protocols using anti cbl

1

Immunoprecipitation and Western Blot Analysis

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Cells lysates were clarified by centrifugation using a Qiashredder spin column (Invitrogen) at 14,000 RPM at 4°C. Equal aliquots of protein (300 μg to 1 mg) of protein lysates were immunoprecipitated using 2-4 μg of one of the following specific antibodies: anti-α5, anti-CBL (Santa Cruz Biotechnology), anti-HA-Tag (Cell Signaling Technology, Beverly, MA), before being incubated overnight at 4°C in a rotator. The following day 20 μg of protein A/G agarose beads (EMD Chemicals) were added and incubated for one hour at 4°C. Immunoprecipitates were then collected by centrifugation at 14000 RPM for three minutes, the pellets were washed three times with RIPA buffer, and solubilized in 25 μl of Laemmli sample buffer containing β-mercaptoethanol. Aliquots were then subjected to SDS-PAGE electrophoresis and immunoblot membranes were reacted with corresponding anti-CBL or anti-GFP (Invitrogen) antibodies. Immunoblots were probed with peroxidase-conjugated secondary antibodies and visualized by ECL detection.
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2

Investigating Cancer Cell Signaling Pathways

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Human renal carcinoma (Caki-1 and A498), human lung cancer (A549), and human breast cancer (MDA-MB361) were procured from American Type Culture Collection (Manassas, VA, USA). Human recombinant TRAIL, zVAD-fmk, and anti-survivin were provided by the R&D system (Minneapolis, MN, USA). MG132, PD98059, AG-490, compound C, and NVP-BEZ235 were supplied from Calbiochem (San Diego, CA, USA). Dexamethasone, cycloheximide, AR-A014418, PP242, BAY11-7082, rapamycin, and anti-actin were provided from Sigma Chemical Co. (St. Louis, MO, USA). Anti-PARP, anti-Bcl-xL, anti-DR5, anti-cIAP1, anti-caspase-8, anti-phospho-GSK3β, and anti-GSK3β were provided by Cell Signaling Technology (Beverly, MA, USA). Anti-Bim, anti-Bax, and anti-XIAP were obtained from BD Biosciences (San Jose, CA, USA). Anti-Mcl-1, anti-Bcl-2, anti-cIAP2, and anti-Cbl were purchased from Santa Cruz Biotechnology (St. Louis, MO, USA). SB203580, SP600125, and anti-c-FLIP(L) were obtained from Enzo Life Sciences (San Diego, CA, USA). Anti-DR4 were obtained from Abcam (Cambridge, MA, USA). pCMV-Myc-Cbl plasmid was a gift from Dr. S. J. Kim (CHA University, Korea). GSK3betaS9A (1016) was a gift from Scott Friedman (Addgene plasmid # 49492; http://n2t.net/addgene:49492; RRID: Addgene_49492) [36 (link)].
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3

Quantitative IHC Analysis of CBL and Ki67

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Immunohistochemistry (IHC) analysis was conducted to evaluate CBL and Ki67 Levels in nude mouse tumor xenografts. The antibodies used were an anti-CBL (Santa Cruz Biotechnology) and anti-Ki67 (Cat. #ab15580; Abcam, Cambridge, MA, United States). In brief, nude mouse tumor xenograft tissues were processed, paraffin-embedded, and sectioned into 4 µm-thick tissue slides. Two independent investigators scored the tissue sections and quantified them with a semi-quantitative scoring system according to a previous study[25 (link)].
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4

EphA2 Signaling Pathway Analysis by Western Blot

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Western blot analysis has previously been described (14 (link), 16 (link)). Anti-EphA2 (Invitrogen), anti-RalA (BD Transduction Laboratories, Oxfordshire, UK), anti-CBL (Santa Cruz Biotechnology, Santa Cruz, CA, USA), anti-p53 (Santa Cruz Biotechnology) mouse monoclonal antibodies were used in conjunction with a HRP-conjugated sheep anti-mouse secondary antibody. Anti-pEphA2Y588, anti-pEphA2S897, anti-pEphA2Y772, anti-RalB, c-Src, YES, and FYN (Cell Signaling) rabbit polyclonal antibodies were used in conjunction with a HRP-conjugated anti-rabbit secondary antibody. Anti-EphA2 (Cell Signaling) and anti-pTyrosine (Cell Signaling) rabbit antibodies were used for co-immunoprecipitation (IP).
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5

Investigating NLRP3 Inflammasome Activation

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PMA (phorbol 12-myristate 13-acetate), ATP, nigericin, CCCP, PP2, dAdT, and MG132 were purchased from Sigma. MitoSox, H2-DCFDA, TMRE, MitoTracker Green FM, and Hoechst were purchased from Life Technologies. MitoTEMPO was purchased from Enzo Life Sciences. Hydrocotarnine was purchased from Enamine. Anti-Pyk2, anti-AIM2, and anti-p-Pyk2 were purchased from Cell Signaling. Anti-Cbl, anti-ASC, anti-caspase-1, anti-IL-1β, anti-phosphotyrosine, and anti-GAPDH were purchased from Santa Cruz. Anti-Ly6G, anti-CD45, and anti-CD11b were purchased from BD Bioscience. Anti-NLRP3 and anti-F4/80 were purchased from BioLegend and eBioscience, respectively. Plasmids encoding mutants CBL (Y371D) and CBL (Y371F) were generated by ligating amplified DNA fragments into the NheI/PmeI-treated pLKO_AS2.neo vector (RNAi Core, Taiwan). The mutant CBL was constructed using a QuikChange II Site-Directed Mutagenesis kit (Agilent Technologies), and the following primers (forward and reverse, respectively): for Cbl Y371D, 5′-CAGGAACAATATGAATTAGACTGTGAGATGGGCTCCAC-3′ and 5′-GTGGAGCCCATCTCACAGTCTAATTCATATTGTTCCTG-3′; and for Cbl Y371F, 5′-CAGGAACAATATGAATTATTCTGTGAGATGGGCTCCAC-3′ and 5′-GTGGAGCCCATCTCACAGAATAATTCATATTGTTCCTG-3′.
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6

Analysis of EGFR signaling complex

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Anti-EGFR, anti-Cbl and anti-endophilins antibodies were purchased from Santa Cruz. Anti-CIN85 monoclonal antibody was from Upstate. Anti-flag monoclonal antibody, phosphatidic acid, DMP (dimethylpimelimidate) and horse radish peroxidase-conjuated secondary antibodies were from Sigma. EGF, Alexa Fluor 647 labeled EGF, PIP Strips™ membrane and fluorescence labeled secondary antibodies (Alexa Fluor 488/546 conjugates) for immunofluorescence were the products of Life Technologies. The leica laser scanning confocal microsystem, including the leica TCS SP2 confocal microscope, Leica confocal scanner, and Leica confocal acquisition software were used with the HCX PL APO 1bd. BL 63.0 X/1.4 oil objective at 1.4 numerical aperture at a working temperature of 22°C.
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7

Dissecting TRAIL-induced Apoptosis Signaling

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Sigma Chemical Co. provided honokiol, cycloheximide and MG132 (St. Louis, MO, USA), and R&D system supplied recombinant human recombinant TRAIL and z-VAD-fmk (Minneapolis, MN, USA). Enzo Life Sciences provided lactacystin (Ann Arbor, MI, USA). The primary antibodies were as follows: Cell Signaling Technology supplied anti-PARP, anti-cleaved caspase-3, anti-Bcl-xL, anti-DR5, anti-CHOP, and anti-UCHL1 (Beverly, MA, USA). Sigma Chemical Co. supplied anti-actin (St. Louis, MO, USA). Enzo Life Sciences provided anti-pro-caspase-3 and anti-c-FLIP (San Diego, CA, USA). BD Biosciences provided anti-Bim and anti-XIAP (San Jose, CA, USA). Abcam supplied anti-DR4 (Cambridge, MA, USA). R&D system supplied anti-survivin (Minneapolis, MN, USA). Santa Cruz Biotechnology provided anti-Mcl-1, anti-Bcl-2, anti-cIAP2, anti-ATF4, anti-Ub, anti-Cbl, anti-Itch, anti-USP14, anti-USP33, anti-OTUB1, anti-TRABID, and anti-STAMBPL1 (St. Louis, MO, USA). Bethyl Laboratories Inc provided anti-USP7 and anti-USP8 (Montgomery, TX, USA). Novus Biologicals supplied anti-USP53 (Centennial, CO, USA). Abnova provided anti-USP9X (Taipei City, Taiwan). The siRNAs were as follows: GFP (control) siRNA (Bioneer, Daejeon, Korea), DR5 siRNA (Invitrogen, Carlsbad, CA, USA), and STAMBPL1 siRNA (Santa Cruz Biotechnology, St. Louis, MO, USA). STAMBPL1 plasmid was a gift from Dr. H.C. Kang (Ajou University, Suwon, Korea).
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8

FcγR1 Antibody-Mediated Signaling Assay

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FcγR1 specific antibody [mAb 32.2 F(ab)2 frgment for IgG] was purchased from Medarex (Annandale, NJ). The cross linking Ab was a rabbit anti-mouse F(ab)2 fragment (R/M) obtained from Organon technika (West Chester, PA). Sheep red blood cells and rabbit IgG fraction to sheep RBC were purchased from ICN (Costa Mesa, CA). Anti-phosphotyrosine (4G10) was procured from Upstate Biotechnology (Lake Placid, NY). Anti-CBL and anti-CRKL were obtained from Santa Cruz biotechnology (Santa Cruz, LA). PKC activator, PMA (phorbol ester) and PKC inhibitor bisindolymaleiamide 1 (GF109203X) were from Calbiochem (San Diego, CA).
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