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10 protocols using cnpase

1

Western Blot Analysis of Cell Signaling

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Antibodies against P-Stat3 (S727, 1:1000), P-Stat3 (Y705, 1:1000), total Stat3 (1:1000), Bcl-2 (1:1000), caspase-3 (1:1000), CNPase (1:1000) and MBP (1:1000) were from Cell Signaling Technology (Danvers, MA). Antibodies for Cre (1:2000) and β-actin (1:10000) were purchased from Sigma. Western blotting analysis was carried out as described (Kim et al., 2012 (link); Steelman et al., 2013 (link)). Briefly, cells were lysed on ice in lysis buffer (1% Triton X-100, 20 mM Tris, pH 7.5, 150 mM NaCl, 1 mM EDTA, 1 mM EGTA, 10 mM Na2P2O7, 10 mM NaF, 1 mM Na3VO4, 1 mM PMSF) containing proteinase inhibitor mixture I (Roche Applied Science), sonicated, and then centrifuged to remove cellular debris. Proteins were separated on polyacrylamide gels by SDS-PAGE, transferred to PVDF membranes, blocked with TBST (50 mM Tris-HCl, pH 7.4, 150 mM NaCl, 0.1% Tween 20) containing 5% nonfat milk or 1% bovine serum albumin (BSA) and probed with the primary antibodies overnight at 4 °C. The membranes were incubated with appropriate HRP-conjugated secondary antibodies for 1 h at RT and visualized by chemiluminescence using the West Pico ECL reagent (Thermo Scientific, Rockford, IL). Western blot images were acquired with a Bio-Rad Chemidoc XRS gel documentation system and quantified with Quantity One software.
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2

Molecular Analysis of Myelination Signaling

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Mice were anesthetized with isoflurane and tissues rapidly dissected on ice, flash frozen in liquid nitrogen and stored at -80°C. The underlying corpus callosum was included with the cortical tissues. Lysate preparation, SDS-PAGE, and western blotting were performed as described previously [15 (link)]. Primary antibodies: pS6 (Ser235/236), pS6 (Ser240/244), S6, pAkt (Ser473), pAkt (Thr308), Akt, pNDRG1-Thr346, NDRG1, MAG, GFAP, CNPase, and actin (Cell Signaling, 1:1000 dilution); myelin basic protein 1:1000 (rat, Abcam), PGP9.5 1:2000 (Serotec, Kidlington, UK), and actin 1:2000 (mouse, Sigma, St. Louis, MO, USA).
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3

Neural Stem Cell Differentiation Assay

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Cic−/− or Cic+/+ NSCs were cultured for 7 days in 8 chamber vessel glass slides (BD Falcom, ref# 354108) in either complete proliferation medium (Stemcell Technologies, Cat#05702) supplemented with EGF (20ng/ml) and FGF (10ng/ml) or differentiation medium (Stemcell Technologies, Cat#05704). Cells were fixed by formalin, blocked with blocking buffer (1%BSA,10% goat serum in PBS), and stained with the following primary antibodies: Nestin (Stemcell Technologies, Cat#60051, 1:50), GFAP (Stemcell Technologies, Cat#60048, 1:200 or Cell Signaling Cat#12389, 1:100), Olig2 (Millipore, Cat#AB9610, 1:100), Ki67 (BD, Cat#550609, 1:100), β3 tubulin (Stemcell Technologies, Cat#01409, 1:1000), or CNPase (Cell Signaling Cat#5664, 1:100). After blocking with primary antibodies, cells were washed 3 times in PBS and stained with appropriate Alexa Fluor secondary antibodies (1:500) for 30 minutes at room temperature. Cells were washed with PBS and counterstained with DAPI before being mounted with mounting medium (Vectashield H-1400). Slides were imaged with a Nikon ECLIPSE TE2000-E fluorescent microscope.
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4

Immunofluorescence Staining of Rat Midbrain

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Rats were anesthetized with chloral hydrate and perfused with cold PBS followed by 4% paraformaldehyde (PFA). We performed coronal frozen sections and selected a section approach to mid-brain, hematoxylin-eosin (H-E) staining, and immunofluorescence staining were performed as previously described (Deng et al., 2015 (link); Wang et al., 2019 (link)). Primary antibodies: Olig2 (1:200), CC1 (1:200), Mrc1 (1:200), Iba-1 (1:200), iNOs (1:200) (Abcam, the UK); MBP (1:200, Biolegend, the USA); Ki67 (1:100), CNPase (1:400) (Cell Signaling Technology, the USA); Arg1 (1:200, Biolegend, the USA). Primary antibodies were detected with the Alexa Fluor 488 goat anti-mouse (1:500) and Alexa Fluor 647 goat anti-rabbit (1:500) (Abcam, the UK) secondary antibody. Fluorescent signals were visualized using a LeicaTCS-SP8 fluorescence microscope. Results were analyzed quantitatively via densitometry by using ImageJ software (NIH, USA).
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5

Immunofluorescence Staining and Imaging Protocol

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Cells were fixed with 4% paraformaldehyde (pH 7.4) for 30 min. The cells were then permeabilized with 0.2% Triton X-100, and non-specific binding sites were blocked with Block Ace (Yukijirushi). Cells were incubated with primary antibodies at 4°C overnight and with secondary antibodies at room temperature for 1 hr. Fluorescent images were captured using IN Cell Analyzer 6000, and the percentage of MNs or neurons was calculated using IN Cell Developer Toolbox v1.9 (GE Healthcare). For phenotype assays, images were acquired by Delta Vision (GE Healthcare). The primary antibodies were as follows: HB9 (Developmental Studies Hybridoma Bank [DSHB], 1:200), Tuj1 (Covance, 1:2,000), Tuj1 (Chemicon, 1:500) for Figures 6A and 6C, ChAT (Chemicon, 1:100), HOXB4 (DSHB, 1:50), HOXC6 (Abcam, 1:200), HOXC9 (Abcam, 1:200), HOXC10 (Abcam, 1:2,000), misfolded SOD1 (MEDIMABS, B8H10, 1:200), misfolded SOD1 (MEDIMABS, A5C3, 1:200), TDP-43 (Proteintech, 1:200), human Nanog (ReproCELL, 1:500), SSEA4 (Millipore, 1:200), SSEA1 (Chemicon, 1:1,000), Nestin (Millipore, 1:200), GFAP (Dako, 1:2,000), Iba1 (Wako Pure Chemicals Industries, 1:500), CNPase (Cell Signaling Technology, 1:100), SOX17 (R&D Systems, 1:200), and αSMA (Dako, 1:500). Tuj1 (Chemicon) was used to co-immunostain with TDP-43.
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6

Protein Analysis of Brain and Spinal Tissue

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Brain or spinal cord frozen tissue (20 mg each) was homogenized in 1× NP40 with a hand-held homogenizer and briefly sonicated with a Branson Sonifier®. NP40 homogenates were centrifuged at 12,300 rpm for 20 min at 4 °C and supernatants were run into NuPage 4–12% Bis-Tris or NuPage Tris-Acetate gels (Life Technologies, NY, USA) under reducing conditions. Samples were normalized based on total protein content, which was estimated by BCA protein assay. Western blot analyses were performed using antibodies against PLP1 (Rabbit, Sigma, MO, USA), MBP (Rabbit, GenScript, NJ, USA), MOG (Rat, R&D Systems, MN, USA), MAG (Rabbit, Cell Signaling, MA, USA), CNPase (Rabbit, Cell Signaling, MA, USA). Relative intensities were quantified using ImageJ software and normalized to a loading control (GAPDH).
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7

Immunostaining of Hippocampal Neurons

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Hippocampal pyramidal neurons (1×104) were fixed with 10% paraformaldehyde for 30 min at 37°C. Cells were washed with PBST for 10 min at 37°C and blocked with blocking buffer (0.01 M PBS, 0.1% Triton X-100, and 1% bovine serum albumin) for 30 min at 37°C. Cells were then incubated with primary antibodies: CNPase (1:11,000, cat no: 5665; Cell Signaling Technology, Inc.) or ATG5 ATG5 (1:1,000, cat no: ab108327; Abcam) in blocking buffer at 4°C for 12 h. After washing with PBS for 3×10 min, the cells were incubated Alexa Fluor 488/568 FITC goat anti-rabbit secondary antibody (1:1,000, Alexa Fluor® 488; Abcam) for 2 h at 37°C. After three washes with PBS for 3×10 min. Images of cells were captured on Leica DMI4000B microscope and analysed using the software of Quantity-One (Bio-Rad Laboratories, Inc.).
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8

Quantitative Western Blot Analysis of Brain Proteins

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After homogenizing whole brains in pre-chilled RIPA (Radio-Immuno-Precipitation Assay) lysis buffer containing protease inhibitors (Roche, Basel, Switzerland) and PMSF, total protein extracts were separated by SDS-PAGE, transferred to PVDF membrane (EMD Millipore), and blocked with 5% Skim milk or BSA in TBS-Tween20. Primary antibodies used were β-tubulin (Novus Biologicals, Colorado, USA), GFAP (Sigma-Aldrich), CNPase (Cell Signaling Technology), MAG (Zymed, California, USA), and MBP (EMD Millipore). Specific protein bands were quantified utilizing FIJI (NIH) and Image Studio (LI-COR Biosciences, Nebraska, USA), and the values (in pixels) obtained were normalized on those of the corresponding β-tubulin bands. Normalized values were then expressed as the percentage of values obtained from matched bands of control tissues.
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9

Quantitative Western Blot Analysis of Oligodendrocyte Markers

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Rats were sacrificed and the right hemisphere of brain was dissected. Protein extraction and western blotting were performed as previously described (Wang et al., 2019 (link)). Primary antibodies: Olig2 (1:1,000) (Abcam, the UK), MBP (1:1,000, Biolegend, the USA), CNPase (1:1000) (Cell Signaling Technology, the USA), β-actin (1:1,000) (Absin, China), followed by incubation with HRP-conjugated secondary antibody (1:1,000) (Absin, China). Results were analyzed quantitatively via densitometry using ImageJ software (NIH, USA). Data represented the mean ± SEM of three independent experiments.
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10

Immunofluorescence Imaging Protocol

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For immunofluorescence analysis, samples were processed as previously described. Confocal imaging was performed by a Nikon A1 confocal laser scanning microscope, as previously described [14] . Primary antibodies were raised against the following molecules: CK18, AFP, CD29, CD44, Aggrecan, Osteocalcin (Santa Cruz, CA, USA); CD90, RUNX2 (Abcam, Cambridge, UK); SSEA4 Collagen-II, TRA-1-81, GFAP, Oct4, Nanog and CNPase (Cell Signaling, MA, USA); CD73 (Gene Tex, CA, USA); CD105, β-Tubulin III (Millipore, CA, USA).
The confocal serial sections were processed with ImageJ software to obtain threedimensional projections, as previously described. The image rendering was performed by Adobe Photoshop software.
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