The largest database of trusted experimental protocols

Dextran alexa fluor 647

Manufactured by Thermo Fisher Scientific
Sourced in China, Sweden

Dextran Alexa Fluor 647 is a fluorescent dye-labeled polymer used for labeling and detection applications in biological research. It consists of the Alexa Fluor 647 fluorescent dye conjugated to dextran, a complex carbohydrate. The Alexa Fluor 647 dye exhibits far-red fluorescence, making it suitable for various imaging and detection techniques.

Automatically generated - may contain errors

30 protocols using dextran alexa fluor 647

1

Intracardial Dextran Labeling of Tadpole Vasculature

Check if the same lab product or an alternative is used in the 5 most similar protocols
Intracardial dextran injection was used for acute labeling of the vasculature in live tadpoles, as well as in assays for uptake of vascular-circulating molecules. For acute labeling of the vasculature, anesthetized tadpoles were arranged (ventral side up) under a dissecting microscope. Approximately 200-500 nl of solution containing 10,000 MW Alexa Fluor 647 dextrans (ThermoFisher Scientific, #D22914) at 25 mg/ml was pressure injected via glass micropipette into the heart. The entire volume of dextran solution is injected in a series of 5- to 10-nl pulses spaced over a minute. Tadpoles were imaged immediately after intracardial injection. For tadpoles imaged at multiple time points (with an interval of 24 h), intracardial dextran injection were performed daily. For dextran uptake experiments, 70,000 MW fluorescein dextrans (ThermoFisher Scientific, #D1822) were used (Hoffmann et al., 2011 (link)). After 5 h of recovery in 0.1× Steinberg’s solution, tadpoles were fixed and subsequently used for immunohistochemistry. For visualization of endocytic vesicles, injections were performed as described, except with 10,000 MW pHrodo red dextrans (ThermoFisher Scientific, #P10361). During the imaging interval, tadpoles anesthetized again and injected intracardially with 10,000 MW Alexa Fluor 647 dextrans (ThermoFisher Scientific, #D22914) to label the vasculature.
+ Open protocol
+ Expand
2

Visualizing Lipid Droplet Dynamics in A431 Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
A431 cells, seeded onto glass-bottom dishes (Nunc LabTek 4-well chambered coverglass), were first labeled with 50 μg/ml Alexa Fluor 647-dextran (10,000 MW; Thermo Scientific) supplemented with 200 μM oleic acid/BSA in 5% LPDS to label late endosomal organelles and to induce LDs. The cells were then pulse-labeled for 2 h with 50 μg/ml BC LN-LDL in serum-free DMEM. During the last 30 min of LDL labeling, HCS LipidTox Red or HCS LipidTox Deep Red (1:1000; Thermo Scientific) was added to the medium to label LDs. The cells were then washed and chased in serum-free CO2-independent medium (Gibco) for the indicated times and imaged by live-cell confocal microscopy. Imaging was performed on a Leica TCS SP8 X attached to a motorized DMi8 inverted microscope with ×63 HC PL APO CS2 water objective (1.20 NA). Experiments were performed at 37 °C in CO2-independent medium (Gibco) supplemented with HCS LipidTox Red/Deep Red (1:1000) in a fully enclosed temperature-controlled environmental chamber. Data were acquired with Leica LAS X (Leica Microsystems). The fraction of BC residing in dextran-positive LEs and LipidTox-positive LDs was quantified from background-subtracted images with ImageJ by using Mander’s overlap coefficient as a measure of colocalization.
+ Open protocol
+ Expand
3

Fluorescent Conjugate Dextran Synthesis

Check if the same lab product or an alternative is used in the 5 most similar protocols
500nm red fluorescent (580/605 excitation/emission) carboxylate-modified microspheres were purchased from Thermo Fisher Scientific, Inc. 10,000 Da (Dalton) Alexa Fluor 647 dextran was purchased from Thermo Fisher Scientific, Inc. 500,000 Da amino-dextran (Thermo Fisher Scientific, Inc.) was covalently labeled by incubation with Alexa Fluor 700-NHS-Ester dye (Thermo Fisher Scientific, Inc.) in 0.1 M NaHCO3 at pH 8.4 for 4 h on a tube rocker. AF700 dextran-dye conjugates were purified from unreacted free dye by Sepharose CL-6B gravity column chromatography after conjugation. Purified dextran-fluorophore conjugates were further confirmed free of unconjugated dye by a second Sepharose CL-6B column analysis [16 (link)]. All reagents were used and maintained under sterile conditions. Hydrodynamic sizes were confirmed pre-injection by dynamic light scattering using a Zetasizer Nano ZS (Malvern Instruments, Ltd., Malvern, U.K.).
+ Open protocol
+ Expand
4

Lysosomal Trafficking Dynamics Imaging

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were seeded on 5 μg/ml fibronectin-coated Lab-Tek Chambered Coverglass units (Thermo Fisher Scientific, 155383). Twenty-four h after transfection, cells were imaged using a spinning-disk confocal microscope (Intelligent Imaging Innovations, Denver, CO, USA). Labeling of lysosomes with internalized dextran was performed 4 h after transfection by loading the cells with Alexa Fluor 647-dextran (Thermo Fisher Scientific, D22914) for 16 h.
+ Open protocol
+ Expand
5

Multimodal Imaging of Brain Vasculature

Check if the same lab product or an alternative is used in the 5 most similar protocols
We characterized the light penetration across the wavelengths we used in our experiments. For the blue spectrum, we retro-orbitally injected the FITC-Dextran dye and recorded a 1P z-stack. Capillaries deeper than 50 μm were not resolvable. For the red side of the spectrum, we retro-orbitally injected 100 μl of a red dye (ThermoFisher, D22914, Alexa Fluor 647-Dextran) at 50 mg/ml and recorded a 1P z-stack. Imaging with red shifted wavelengths allowed imaging of capillaries down to 300 μm of brain tissue (Fig. S7)
+ Open protocol
+ Expand
6

Intracellular pH Measurement in Neurons and Glioma Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cortical neurons at 12 DIV were transfected with LAMP-1 GFP as above, and then loaded with 10 µg each of pH-sensitive pHrodo dextran (Thermo Fisher P10361) and pH-insensitive Alexa Fluor 647 dextran (Thermo Fisher D22914) overnight. The following morning, dextran containing medium was washed with PBS, and neurons incubated in fresh medium for 3 h. Following drug treatments, neurons were imaged by fluorescence microscopy. The ratio of 668/585 was measured and converted to pH using an intracellular pH calibration kit (Thermo Fisher Scientific, P35379) as described in (Johnson et al., 2016 (link)). Only LAMP1-GFP and dextran-positive endolysosomes were included in the analysis.
An alternative protocol was used for studies of endolysosome pH in U87MG cells. Cells were incubated with the ratiometric probe LysoSensor DND-160 (Invitrogen L7545; 1 µM) for 10 min, washed three times with PBS, and then analyzed with fluorescence microscopy at excitation wavelengths of 340 nm and 380 nm and an emission wavelength of 510 nm (Hui et al., 2012 (link)). Endolysosomes were differentiated from Golgi by adding CellLight Golgi-RFP (Invitrogen C10593; 2 µl/10 k cells) and incubating cells overnight at 37°C.
+ Open protocol
+ Expand
7

Astaxanthin Modulates Macrophage Immune Responses

Check if the same lab product or an alternative is used in the 5 most similar protocols
Astaxanthin (mol wt 596.84), LPS derived from Escherichia coli 026: B6, FITC-Dextran (mol wt 40,000) and Cobalt protoporphyrin (CoPP, a HO-1 inducer) were from Sigma-Aldrich. Alexa Fluor 647-Dextran (mol wt 10,000) was from Thermo Fisher. Carboxyfluorescein succinimidylester (CFSE) and RPMI 1640 medium were from Invitrogen. Fetal bovine serum (FBS) was from Hyclone. Recombinant CCL19, GM-CSF, and IL-4 were from Peprotech. CCK-8 kit was from Beyotime. CD4+ T cell isolation kit was from Miltenyi Biotech. Fluorescent-labeled anti-mouse mAbs, PerCP-Cy5.5 CD69, FITC-MHCII, PE-CD40, PE-CD80, FITC-CD86, PE-CCR7 or respective isotype controls, were from BD PharMingen. Alexa Fluor 647 HO-1 or respective isotype was from Abcam. PE-Nrf2 or respective isotype was from Cell Signaling Technology. Tin protoporphyrin IX (SnPP, a HO-1 inhibitor) was from MedChemExpress.
+ Open protocol
+ Expand
8

Lysosome Tracking in HEK293T Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Stable HEK293T lentiviral cell-line expressing RpH-LAMP1-3xFLAG and untransduced HEK293T cells were seeded as a co-culture onto glass-bottom imaging dishes at the desired density for each experiment. 24 h post-seeding, cells were loaded with 20 μg/ml Alexa Fluor 647-Dextran (Thermo Fisher Scientific, D22914) for 16 h to label all lysosomes at 37°C 5% CO2, and chased for 3 h the following day at 37°C 5% CO2 prior to live-cell imaging on a Leica LSM-800 confocal microscope using 488 nm, 561 nm and 647 nm lasers and 63x oil objective.
+ Open protocol
+ Expand
9

Sema3d knockdown migration assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
Donor Tg(kdrl:EGFP)s843 embryos were injected with sema3d MO and 2.5% Alexa Fluor 647 Dextran (Thermo Fisher Scientific). Cells were transplanted into Tg(kdrl:HRAS-mCherry)s896 hosts as described previously (Helker et al., 2015 (link)).
+ Open protocol
+ Expand
10

Caveolin-1 and PTRF Retroviral Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Caveolin-1 Flag was excised from pCDNA3.1 Cav1 with BamH1/EcoR1, klenow treated, and ligated into the klenow blunt-ended EcoR1 site of the GFP-expressing retroviral vector MIGR1.
PTRF was excised from pIRES2-cavin1 EGFP with BglII/BamH1 and ligated into the BglII site of MIGR1. The C-terminally EGFP-tagged 1-integrin was developed by Prof. Martin Humphries (University of Manchester, UK) and described elsewhere 70 (link) The following primary antibodies were used: rat monoclonal anti-mouse total 1-integrin Secondary antibodies were Alexa Fluor®-488 goat anti-rat (Thermo Fisher Scientific™); Alexa Fluor®-647 goat anti-rat (Thermo Fisher Scientific™); Alexa Fluor®-488 phalloidin (Thermo Fisher Scientific™); HRP-linked anti-biotin from Cell Signaling (#7075); and Alexa Fluor®-647 phalloidin (Thermo Fisher Scientific™). EZ-Link™ SulfoNHS-SS-biotin was from Thermo Fisher Scientific (D21331), 2-mercaptoethanesulfonic acid (MESNA) and iodoacetamide from Sigma Aldrich (63707 and I1149), the Cdc42 inhibitor ML141 from Tocris Bioscience, and Alexa Fluor™ 647-Dextran from Thermo Fisher Scientific (D22914). Silencing of p190RhoGAP was as previously described 20 (link) .
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!