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7 protocols using a21436

1

Immunofluorescence Analysis of hfBECs

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Early and mid-gestation hfBECs (N = 3 subjects in duplicates/group) were cultured to approximately 75% confluence specifically for immunofluorescence analysis as described previously [38 (link)]. In brief, hfBECs were rinsed with cold PBS, fixed with 4% paraformaldehyde (Electron Microscopy Sciences) for 15 min and then permeabilized with 0.05% Tween 20 in PBS (5 min, room temperature). Autofluorescence was reduced using 0.1% Sudan Black in 70% ethanol (1 min) and non‐specific binding was blocked using 2% BSA for 1 h. Slides with hfBECs were incubated with primary antibodies, TLR-3 (ab62566, 1:500, Abcam, Toronto, ON, Canada), TLR-4 (ab22048, 1;200, Abcam), TLR-8 (ab180610, 1:200, Abcam), von Willebrand Factor (vWF) (ab11713,1:500, Abcam), anti-rabbit IgG (ab171870, 1:500, Abcam) and anti-mouse IgG2b (X0944D,1:500, Dako, Burloak, ON, Canada). overnight at 4 °C. Slides were then incubated with fluorescent secondary antibodies; the anti-mouse Alexa 488 (A21202, 1:1000), the anti-rabbit Alexa 488 (A21206, 1:1000), the anti-rabbit Alexa 568 (A10042, 1:1000), or the anti-sheep Alexa 555 (A21436, 1:000) secondary antibodies (Thermo Fisher Scientific) and counterstained with DAPI (1 μg/mL, 1 h). Fluorescent microscopy was performed using a spinning disc confocal microscope at various magnification (Leica DMI6000 B, Concord, ON, Canada).
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2

O-GlcNAcylation Immunofluorescence Staining

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For O-GlcNac-Albumin immunofluorescence staining, samples dewax were pre-treated in PTLink Citrate Buffer pH 6. Then, sections were washed three times in TBS 0.1 M for 5 min each and incubated in blocking solution (2% donkey serum + 0.3% Triton X-100 + 0.25% BSA) in TBS 0.1 M for 60 min. Next, sections were incubated with the primary antibodies O-GlcNac (ab2739, Abcam) (1:200) and Albumin (ab8940, Abcam) (1:200) in blocking solution for 24 h at 4 °C. After incubation in the primary antibody, sections were rinsed with TBS 0.1 M three times for 5 min each and then incubated in the solution (0.3% Triton X-100 + 0.25% BSA in TBS 0.1 M) with the secondary antibodies: Alexa 488 anti-mouse (115-545-003, Jackson ImmunoResearch Labs) and Alexa 555 anti-Sheep (A21436, Thermo) 1:1000 for 60 min at room temperature. Sections were then washed and coverslipped with Fluorogel coverslip mounting solution. In all the histological staining, up to 4 representative microphotographs of each animal were taken with a Thunder Imager tissue microscope (Leica Microsystems) (immunofluorescence staining). Leica Las X 3.7.4 software was used for acquisition and analysis of immunofluorescence staining. Image J 1.52p software was used for the quantification of the staining area.
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3

Immunofluorescence Analysis of Popliteal Arteries

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Popliteal arteries were fixed with 4% paraformaldehyde for 24 h at room temperature, followed by procession by a serial alcohol gradient and embedment in paraffin wax blocks. The slides were incubated with primary antibodies that include GAB1 Rabbit mAb (#3232; Cell Signaling), LC3B (E5Q2K) Mouse mAb (#83506; Cell Signaling), and Human CD31/PECAM-1 Antibody Sheep mAb (#AF806-SP; R&D) overnight at 4°C, followed by the incubation of secondary antibodies that include donkey anti-rabbit IgG Alexa 488 (#A32790, Invitrogen, green), donkey anti-mouse IgG Alexa plus 647 (#A32787, Invitrogen, pink), and donkey anti-Sheep IgG Alexa 555 (#A-21436, Invitrogen, red). Nuclei were stained with DAPI (#D1306; Invitrogen, Paisley, United Kingdom). An epifluorescence microscope (#DM4000 M; Leica, Wetzlar, Germany) was used for image capture and analysis.
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4

Immunofluorescence Localization of Cell Cycle Proteins

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Primary antibodies: rabbit‐anti‐MAD2 (1:200; ab70385, abcam; or 1:500 ab70383, abcam); sheep‐anti‐tryptophan hydroxylase/TPH (1:150; ab32821, abcam); rabbit‐anti‐BubR1 (1:100; A300‐386A, Bethyl Laboratories Inc.); rabbit‐anti‐P31comet (murine) (1:100; provided by Dr. Hongtao Yu; UT Southwestern, TX, USA); mouse‐anti‐SERT (H‐45) (1:20; raised and provided by Dr. Egon Ogris, Max Perutz Labs, Vienna, Austria (Montgomery et al, 2014 (link))); rabbit‐anti‐SEC24C (1:100; provided by Dr. Randy Schekman, UC Berkeley, CA, USA); rabbit‐anti‐GM130 (1:200; ab52649, abcam); rabbit‐anti‐β‐COP (1:100; PA1‐061, Invitrogen); rabbit‐anti‐TGN38 (1:100; OST00228G‐500UG, Osenses) rabbit‐anti‐Rab7 (1:100; 9367S, Cell Signaling); rabbit‐anti‐Rab5 (1:100; 3547S; Cell Signaling); rabbit‐anti‐Rab11A (1:100; 71‐5300; Invitrogen); rabbit‐anti‐Rab4 (1:100; PA3912, Invitrogen); and rabbit‐anti‐LAMP1 (1:100, L1418; Sigma‐Aldrich). Secondary antibodies: Alexa Fluor 488 donkey‐anti‐rabbit IgG (1:500; A21206, Invitrogen); Alexa Fluor 555 donkey‐anti‐sheep IgG (1:500; A21436, Invitrogen); Alexa Fluor 555 donkey‐anti‐mouse (1:500; A31570, Invitrogen); and Alexa Fluor 647 goat‐anti‐rabbit (1:500; A32733, Invitrogen).
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5

Detecting miR-124 and Glial Activation in Retina

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ISH combined with immunofluorescent staining was performed to detect miR-124 expression and glial activation as described previously [21 (link)]. Briefly, 6 µm thickness tissue sections from formalin-fixed and paraffin-embedded retinae were hybridized with 80 nM digoxigenin (DIG) labeled miRCURY LNA miR-124 Detection Probe (Qiagen) or scrambled miRNA probes (Qiagen) at 53 °C for 1 h. After washing, the sections were incubated with sheep anti-digoxigenin (11333089001, Roche, 1:800) and goat anti-GFAP (sc-6170, Santa Cruz Biotechnology, Heidelberg, Germany, 1:100) antibodies at 4 °C overnight. The secondary antibodies of donkey anti-sheep Alexa Fluor 555 (A21436, Invitrogen, Schwerte, Germany, 1:200) and chicken anti-goat Alexa Fluor 488 (21467, Invitrogen, 1:200) were incubated at room temperature for one hour. The nuclei were stained with DRAQ5TM (65-0880, Invitrogen, 1:1000) for 10 min. Images were acquired with the Leica TCS SP8 confocal microscope (Leica Microsystems, Wetzlar, Germany) under constant exposure time and gain for all specimens. The quantification of GFAP fluorescence intensity in Müller glial radial fibers and the measurement of the length of the endfeet of Müller glia were performed using Image J/Fiji software version 1.53c.
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6

Spatiotemporal Gene Expression Profiling

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Embryos were collected 3 h after being laid and were fixated with formaldehyde. Fluorescence in situ hybridization was performed using previously published protocols (Lim et al., 2015 (link)). Kr-DIG, hb-FITC, eve-Biotin, yellow-Biotin RNA probes and Alexa Fluors were used to visualize Kr, hb, eve and yellow expression. Sheep anti-DIG (11093274910, Roche), rabbit anti-FITC (A889, Invitrogen) and mouse anti-Biotin (200-002-211, Jackson Immuno Research) were used as primary antibodies, Alexa Fluor donkey anti-rabbit 488 (A32790, Invitrogen), donkey anti-sheep 555 (A21436, Invitrogen) and donkey anti-mouse 647 (A32787, Invitrogen) were used as secondary antibodies, and DAPI (D1306, Invitrogen) was used to stain nuclei. yellow probe was used to visualize iab5>PP7-yellow. Embryos were imaged with a Zeiss LSM800 confocal laser scanning microscope and Plan-Apochromat 20×/0.8 N.A. objective. Single image size was set to 1024×1024 pixels. Only the laterally oriented embryos in mid-NC14 were analyzed to minimize the noise due to orientation and developmental stage variations. Twenty-four biological replicates were taken for the wild-type embryos; 17 were taken for the Kr heterozygous embryos from two experimental replicates.
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7

Immunohistochemical Analysis of Angiogenic Markers

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Primary antibodies were rabbit anti-pIκB (2895S, Cell Signaling Technology), rabbit anti-NFκB (8242, Cell Signaling Technology), rabbit anti-pNFκB (3033, Cell Signaling Technology), rabbit anti-GAPDH (5174, Cell Signaling Technology), sheep anti-BrdU (ab1893, Abcam), mouse anti-CD31 (ab9498, Abcam), rabbit anti-CD68 antibody (ab125212, Abcam), rabbit anti-VCAM-1 (ab134047, Abcam), rabbit anti-VEGFR2 (ab 45010, Abcam), mouse anti-E-Cadherin (ab 76055, Abcam), mouse anti-ICAM-1 (ab 171123, Abcam), rabbit anti-Tie-2 (sc-9026, Santa Cruz Biotechnology) and Goat anti-mGalectin-3 (AF1197, R&D Systems). Secondary antibodies were donkey anti-mouse IgG (sc-2314, Santa Cruz Biotechnology), donkey anti-rabbit IgG-HRP (7074, Cell Signaling Technology), donkey anti-sheep IgG-555 (A21436; Invitrogen) and rabbit anti-sheep IgG (6150-04, Southern Biotech).
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