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3 protocols using ym201636

1

Reagents and Antibodies for Cell Line Studies

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RPMI 1640 and fetal bovine serum (FBS) were purchased from Gibco (Grand Island, NY, USA). Dimethylsulfoxide (DMSO), Hoechst 33342, XAV-939, Gefitinib and YM201636 were purchased from Sigma (St. Louis, MO, USA). U0126 was purchased from Cell Signaling Technology (Beverly, MA, USA). Polyclonal anti-human β-catenin antibody, monoclonal anti-human EGFR antibody, monoclonal anti-human phospho-EGFR (Y1068) antibody, monoclonal anti-human β-actin antibody and the corresponding horseradish peroxidase-conjugated second antibodies were purchased from Santa Cruz Biotechnologies (Santa Cruz, CA, USA). Monoclonal anti-human EEA.1, monoclonal anti-human phospho-ERK1/2 (Thr202) antibody, polyclonal anti-human ERK1/2 and monoclonal anti-human Lamin B antibody were purchased from Cell Signaling Technology (Beverly, MA, USA). The secondary anti-mouse or anti-rabbit antibodies conjugated with Alexa Fluor 488 or Alexa Fluor 568 was purchased from Invitrogen (Carlsbad, CA, USA). Two different Akt1 specific siRNAs purchased from GE Dharmacon (Lafayette, CO, USA) were used: ACA AGG ACG GGC ACA TTAA (1#siRNA), CAA GGG CAC TTT CGG CAAG (2#siRNA).
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2

Polyamine Metabolism Regulation Assays

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Spermine, N1‐acetylspermidine, N8‐acetylspermidine, bafilomycin A1, nocodazole, BAPTA‐AM and YM201636 were purchased from Sigma‐Aldrich (St. Louis, MO). N1‐AcetylSpermine, N1, N12‐diacetylSpermine, N1, N8‐diacetylspermidine, acrolein and hydrogen peroxide were purchased from FUJIFILM Wako Pure Chemical (Osaka, Japan). Aminoguanidine hydrochloride was from Tokyo Chemical Industry Co., Ltd. (Tokyo, Japan). Ciliobrevin D, Jak3 inhibitor VI and Gö 6976 were from Merck Millipore (Burlington, MA).
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3

Inhibiting PIKfyve Regulates TGF-β1-Induced Fibroblast Contraction

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PIKfyve inhibitors Apilimod and YM-201,636 (Sigma) were dissolved at 10 mM in DMSO and arranged into a 10-step 3-fold serial dilution columnwise-wise in 3 rows each on a 384-well drug source plate. FLECSplates were pre-filled with 25 µL of serum-free DMEM, and then 100 nL of the PIKfyve inhibitor solutions were transferred from their source plate to the corresponding wells on the FLECSplate using a Biomek FXP pin tool. The FLECSplates were shaken at 100 RPM for min to ensure mixing. HLF cells were then seeded as previously described, with TGF-β1 already mixed into the cell suspension, into columns 2-23, while column was seeded with cells not receiving TGF-β1. Plates were imaged after 24 h as previously described. Percent inhibition was calculated by normalizing measured contraction values against both positive controls (e.g. no TGF-β1) and negative controls (TGF-β1 and vehicle only).
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