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3 protocols using anti active caspase 3 fitc

1

Murine Model of Experimental Autoimmune Encephalomyelitis

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Myelin oligodendrocyte glycoprotein 35-55 (MOG35-55) peptide (MEVGWYRSPFSRVVHLYRNGK) was generated by the Protein Core laboratory of the Blood Research Institute, BloodCenter of Wisconsin. The 2.4G2 hybridoma was obtained from the American Tissue Culture Collection. Anti-mouse CD4-APC-eFluor 780, CD25-Alexa Fluor 700, CD11b-PE, CD11b-biotin, IL-17-Alexa Fluor 647, CD11c-Biotin, B220-Biotin, CD8-Biotin, CD11b-biotin, Foxp3-PE and streptavidin-PE Cy5.5 were purchased from eBioscience (San Diego, CA). Anti-mouse B220-PE-Texas Red, IFN-γ-PE, anti-active caspase 3-FITC and anti-human Ki67-FITC were purchased from BD Biosciences (San Diego, CA). Anti-mouse Ly-6C-APC and Ly-6G-APC-Cy7 were purchased from Biolegend (San Diego, CA). Anti-mouse/rat Neuropilin-1-APC was obtained from R&D Systems (Minneapolis, MN). Monoclonal antibodies SMI-32 (anti-nonphosphorylated neurofilament-H) and SMI-99 (anti-myelin basic protein (MBP)) were purchased from Covance (Emeryville, CA). Strepavidin Alexa 405 and goat anti-mouse Alexa 546 (H + L) were purchased from Life Sciences Advanced Technologies (St. Petersburg, FL). Anti-Biotin microbeads were purchased from MiltenyiBiotec (Auburn, CA).
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2

Flow Cytometric Analysis of DNA Damage

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The upregulation of DNA damage markers as response to TOP1-inhibiting ADCs were analyzed by a flow cytometry–based readout. For this, 30,000 HER2-positive SKBR-3 cells were incubated for 24 hours to 72 hours with 0.5 or 5 μg/mL of ADCs. After the end of the incubation time, cells were stained with LIVE/DEAD Fixable Aqua (Thermo Fisher Scientific) followed by fixation and permeabilization using the BD Cytofix/Cytoperm Kit (BD Biosciences) according to the manufacturer's instructions. Intracellular staining of DNA damage markers was performed using anti-cleaved PARP (Asp214) PE, anti-H2AX (pSer139) AF647, and anti-active caspase 3 FITC (all BD Biosciences) or respective isotype controls. Cells were acquired on a CytoFLEX S flow cytometer (Beckman Coulter) and the percentage of positive cells was determined.
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3

Apoptosis Evaluation of THP-1 Cells

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THP-1 cells (1 × 106 cells/mL) were seeded into a 24-well plate and
incubated at 37°C overnight. After that, the cells were incubated with TAIIA
and/or 3MA for 3, 6, and 24 hours. Cultured cells were centrifuged at 1200 rpm
at room temperature for 5 minutes followed by washing with ice-cold PBS 3 times.
Afterward, pelleted cells were stained with anti-active caspase-3-FITC (BD
Pharmingen, San Diego, CA, USA) and PI in 500 μL apoptosis binding buffer for
15 minutes and analyzed by flow cytometry using a FACSVerse instrument, and the
data were analyzed using FlowJo software.
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