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9 protocols using rea293

1

Cytotoxic NK Cell Receptor Analysis

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For the analysis of activating receptor expression by cytotoxic NK cells (CD3-; CD56dim), 5 × 106 human PBMCs were treated with the respective chemotherapeutic compound and incubated for 72 h (37 °C/5% CO2). Then cells were harvested and 1 × 106 live cells were washed with wash buffer, followed by incubation with 10 µL of Tandem Signal Enhancer (Miltenyi Biotec). Incubation with the following antibodies in a total volume of 100 µL was conducted for 20 min at RT: CD3-VioGreen (REA613, 1:200), CD56-APC-Vio770 (REA196, 1:200), CD226-VioBlue (REA1040, 1:50); CD335 (NKp46)-Vio Bright B515 (REA808, 1:50), CD337 (NKp30)-PE (REA823, 1:75), CD336 (NKp44)-APC (REA1163, 1:75), and CD314 (NKG2D)-PE-Vio 770 (REA1228, 1:75), all from Miltenyi Biotec. As isotype controls served respective REA controls (Miltenyi Biotec, REA293). To exclude dead cells from analysis, 0.25 µg propidium iodide solution was added prior to acquisition. At least 20,000 CD3−/CD56+ cells were analyzed for each sample.
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2

Evaluation of AKTpS473 in Diagnostic Blast Cells

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Diagnostic blast cells were obtained from thawed cryopreserved BM samples after red blood cell lysis. Fixation, permeabilization and staining (with both intracellular and cell surface markers) were performed using the PerFix-no centrifuge assay kit (Beckman Coulter) according to the manufacturer’s instructions. The antibody panel contained: anti-AKTpS473-Vio515 (clone: REA359, Miltenyi Biotec), anti-CD33-PC5.5 (clone D3HL60.251, Beckman Coulter), anti-CD34-PC7 (clone 581, Beckman Coulter), anti-CD117/KIT-APC (clone 104D2D1, Beckman Coulter), anti-CD3-AA750 (clone UCHT1, Beckman Coulter), anti-CD4-PB (clone 13B8.2, Beckman Coulter) and anti-CD45-KO (clone J33, Beckman Coulter). Blast cells were gated as CD45dim, SSClow, CD33+, excluding lymphocytes (CD45bright, SSClow, CD33−), monocytes (CD45int/bright, SSCint, CD33bright) and mature myelomonocytic cells (CD45int, SSChigh, CD33dim/neg). Isotype control (clone REA293, Miltenyi Biotec) was used to better define the threshold of AKTpS473-positive cells. AKTpS473 expression levels were calculated as [mean fluorescent intensity (MFI) of blast cells/MFI of isotype IgG control]. Measurements were performed on a Navios flow cytometer and analyzed with Kaluza software (Beckman-Coulter).
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3

Cardiomyocyte Differentiation and Analysis

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On day 27 ± 2 of the differentiation the cells were detached and dissociated with Detachment Kit 2 (Promocell, Heidelberg, Germany) centrifuged 5 min at 200 g then fixed with paraformaldehyde (4%) for 10 min at RT (Sigma-Aldrich) and permeabilized with 90% cold methanol for 15 min at +4 °C . The cells were washed 3 times with PBS and then stained with Anti-Cardiac Troponin T-APC 1:100, recombinant human IgG1, clone REA400 (MiltenyiBiotec, Bergisch Gladbach, Germany) or CTL-I APC 1:100, Monoclonal REA Control (I) antibody human, clone REA293 (MiltenyiBiotec) diluted in PBS plus 0.1% Triton X-100 and 0.5% BSA for 45min at RT in the dark. The cells were washed and resuspended with PBS plus 0.5% BSA and collected on MACSQuant® Analyzer 10 (MiltenyiBiotec) and analyzed using FlowJo.
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4

Cytochrome-c Release Assay in Macrophages

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Cytochrome‐c release was measured under relevant specified conditions (see figure legends for details), as performed previously (Waterhouse & Trapani, 2003 (link)). Briefly, either unstained BMMo or macrophages, or Ly6C+‐stained monocytes were washed 1× in PBS and resuspended in 50 μl MELB buffer (20 mM HEPES pH 7.5, 100 mM sucrose, 2.5 mM MgCl2, 100 mM KCl) supplemented with 0.025% w/v digitonin and complete protease inhibitors (Roche) for 10 min on ice to allow permeabilisation of the plasma membrane. Cells were then washed with MELB buffer before fixation in 50 μl eBioscience fixation buffer for 30 min on ice. Cells were washed 1× with eBioscience permeabilization buffer before incubation with an APC‐conjugated anti‐cytochrome‐c antibody (REA702; Miltenyi Biotech) or APC‐conjugated isotype control (REA293; Miltenyi Biotech) for 30 min on ice. Cells were washed 1× before data acquisition on a BD LSR‐Fortessa X20 instrument and analysis using FlowJo.
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5

Immunophenotyping of Adipose-Derived Stem Cells

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Surface marker expression was analyzed by flow cytometry. ASCs were used from 4 donors. Cells were incubated at for 4 °C for 15 min in the dark with the following antibodies: CD45 (1:50, REA747), CD73 (1:50, REA804), CD90 (1:50, REA897), CD105 (1:50, REA794) as well as the isotype control (1:50, REA293) (all from Miltenyi Biotec, Germany). Flow cytometry measurement was done on a MACSQuant10 (Miltenyi Biotech) and data was analyzed using FlowLogic (Miltenyi Biotech). A minimum of 10,000 events was analyzed for each sample.
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Flow Cytometry Staining Protocol

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Cells were transferred to FACS tubes (adherent cells were harvested using FACS buffer (PBS pH 7.4 with 0.05% BSA and 2 mM EDTA) prior to staining) with 1 mL of FACS buffer and centrifuged at 150 g for 5 min. Supernatant was decanted, and cells were resuspended in 50 μL of FACS buffer. 10 μL of human IgG (Thermo Fisher 027102) was added, cells were flicked to mix, and were incubated at 4°C for 5 min. Conjugated primary antibody was then added at the manufacturer's recommended dilution, cells were flicked to mix and incubated at 4°C for 30 min. Cells were then washed three times with 1 mL of FACS buffer, centrifuging at 150 g for 5 min and decanting the supernatant after each wash. Cells were resuspended in two drops of FACS buffer prior to flow cytometry. For Miltenyi Biotec antibodies, cells were stained at 4°C for 15 min without blocking and were washed once prior to flow cytometry, as per manufacturer protocol. Antibodies used in this study were as follows: Anti-FLAG-APC (Abcam ab72569), anti-CD2-APC (R&D Systems FAB18561A), anti-CXCR4 (Miltenyi REA649, 130-117-354), anti-CD25-PE (Miltenyi REA945, 130-115-628), anti-SLAM-PE (Miltenyi REA151, 130-123-970), and anti-mouse IgG1-APC (R&D Systems IC002A) or anti-human IgG1-PE (Miltenyi REA293, 130-113-438) were used as isotype controls where appropriate.
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7

Comprehensive Phenotyping of PCSC Populations

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For the determination of ALDH activity, as well as PD-L1/-L2, B2M and HLA-A expressions, the PCSC populations were cultured in growth medium and then partially pre-treated with the cytokine IFNγ (10 ng/mL; Peprotech, Hamburg, Germany) for 72 h. PCSCs were detached via trypsin, harvested, and analyzed via flow cytometry on a Gallios Flow Cytometer (Beckman Coulter Life Sciences, Krefeld, Germany). The following antibodies were used for flow cytometry: anti-CD274 PE (PD-L1; 1:50; MIH1; BD Biosciences, Heidelberg, Germany), anti-CD273 APC-Vio®770 (PD-L2; 1:10; MIH18; Miltenyi Biotec), anti-B2M PE (1:50; REAL845; Miltenyi Biotec) and anti-HLA-A2 PE (1:50; BB7.2; BD Biosciences), according to manufacturer’s instructions. IsoIgG1-PE (1:10; IS5-21F5; Miltenyi Biotec) and REA Control APC-Vio®770 (1:10; REA293; Miltenyi Biotec) were used as isotype control antibodies. The measurement of ALDH activity was performed using the ALDEFLUOR™ Kit from STEMCELL Technologies (Vancouver, BC, Canada), in accordance with their guidelines and the approach of Moreb et al. [78 (link)]. For all experiments, dead cells were excluded with Propidium Iodide (PI; 1µg/mL; Thermo Fisher Scientific), and automatic compensation and the resulting analyses were conducted using the evaluation software Kaluza 1.0 from Beckman Coulter Life Sciences.
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8

Flow Cytometric Analysis of NK Cell Subsets

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The cells were stained with the appropriate antibodies and fixed in 1% paraformaldehyde containing phosphate-buffered saline (PBS) at 4 °C for >30 min. Data were obtained using a BD FACSCalibur flow cytometer (BD Biosciences, San Jose, CA, USA) and analyzed using FlowJo version 10 (BD Biosciences). The following antibodies were used: Alexa 488-labeled anti-CD56 (clone B159, BD Pharmingen, Franklin Lakes, NJ, USA), allophycocyanin (APC)-labeled anti-KIR2DL1 (REA284, Miltenyi Biotech), and APC-labeled anti-KIR2DL2/3 (DX27, Miltenyi Biotech, Bergisch, Gladbach, Germany). The isotype control was APC-labeled IgG (REA293, Miltenyi Biotech).
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9

Flow Cytometric Characterization of ASCs

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Surface marker expression was analyzed by ow cytometry. ASCs were used from 4 donors. Cells were incubated at for 4°C for 15 minutes in the dark with the following antibodies: CD45 (1:50, REA747), CD73 (1:50, REA804), CD90 (1:50, REA897), CD105 (1:50, REA794) as well as the isotype control (1:50, REA293) (all from Miltenyi Biotec, Germany). Flow cytometry measurement was done on a MACSQuant10 (Miltenyi Biotech) and data was analyzed using FlowLogic (Miltenyi Biotech). A minimum of 10,000 events was analyzed for each sample.
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