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3 protocols using pathogreen histofluorescent stain

1

Immunohistochemical Analysis of Mitochondrial Proteins

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All chemicals were from Sigma. Antibodies used included the following: anti-NDUFS4 (1:100 for immunohistochemistry [IHC] and 1:1,000 for western blot [WB]) was from Novus Biologicals (catalog no. NBP1-31465); anti-CD68 (1:100) was from Abcam (catalog no. ab125212); anti-GFAP (1:1,000) was from Sigma-Aldrich (catalog no. G3893); anti-NDUFA9, and anti-SDHB (1:1,000) were from MitoSciences (catalog no. ab14713). Secondary antibodies were from Promega (catalog nos. W4011 [rabbit] and W4021 [mouse]). PathoGreen histofluorescent stain (1,000X in water) was from Biotium (catalog no. 80027-5mL). The Novolink Polymer Detection System was from Leica Biosystems (catalog no. RE7140-K). The anti-LY6A antibody (dilution 1:1,000) was from Abcam (catalog no. ab109211).
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2

Neuronal Degeneration Histofluorescent Staining

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PathoGreen™ Histofluorescent Stain (Biotium, CA, United States) was used to detect neuronal degeneration. Experiments were performed according to manufacturer’s instructions. Briefly, the brain was perfused and fixed with 4% PFA overnight at 4°C. Then, the brain was cut into 50 μm coronal slices, which were dried at 60°C for 30 min. Slices were incubated with 0.06% KMnO4 and 1,000 × PathoGreen™ stock solution at RT for 10 min each. After air drying, slices were incubated with xylene and mounted onto glass slides. Images were captured using a laser scanning confocal microscope with a 40 × lens objective.
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3

Immunofluorescence Analysis of Microglia and Astrocytes

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C1r mouse monoclonal antibody (mAb) (#sc-514105), goat anti-rabbit IgG-HRP (#sc-2004) and goat anti-mouse IgG-HRP (#sc-2005) were obtained from Santa Cruz Biotechnology (Dallas, TX, USA). CD11b/c mouse mAb (ab1211) was purchased from Abcam (Waltham, MA, USA). CD11b rabbit polyclonal antibody (pAb) (#NB110–89474) and GFAP rabbit pAb (#NB300–141) were procured from Novus Biologicals (Centennial, CO, USA). GAPDH rabbit mAb (#2118S) was purchased from Cell Signaling Technology (Danvers, MA, USA). PathoGreen Histofluorescent stain (#80027–5) was purchased from Biotium (Fremont, CA, USA). Cy3-goat anti-rabbit IgG (#111–165-144) and Cy2-goat anti-mouse IgG (#115–225-146) were procured from Jackson ImmunoResearch Laboratories (West Grove, PA, USA).
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