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5 protocols using rt qpcr kit

1

Vitamin D Receptor Expression in Mouse Lung

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Mouse lung tissues were harvested. Total RNA was extracted using TRIzol reagent (Thermo Fisher Scientific, Inc., Waltham, MA, USA), dried by sedimentation and incubated with 50 µl diethylpyrocarbonate-treated water. RNA purity and concentration were determined using an ultraviolet spectrophotometer. Total RNA was reserve transcribed into cDNA using the High-Capacity RNA-to-cDNA™ kit (K1266, Invitrogen; Thermo Fisher Scientific, Inc.). According to the manufacturer's protocol of the RT-qPCR kit (Qiagen GmbH, Hilden, Germany), VDR expression was detected. RNA primers were synthesized by Invitrogen (Thermo Fisher Scientific, Inc.). The following primer sequences were used for the PCR: VDR forward, 5′-GTAAGTACAGGGAGCTATT-3′ and reverse, 5′-GATCTGAATGAAGAAGGCT-3′; GAPDH forward, 5′-AAGATCGAGAATTGACA-3′ and reverse, 5′-GTCGGTGTGAACGGATTTG-3′.
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2

Mouse Gut Microbiome Quantification

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DNA from mouse stools was extracted using a Stool Mini kit (Qiagen). Genes encoding 16S rRNA were quantified using a reverse transcription-quantitative PCR (RT-qPCR) kit (Qiagen). The specific primer pairs were as follows: for Escherichia spp., 5′-GTTAATACCTTTGCTCATTGA-3′ and 5′-ACCAGGGTATCTAATCCTGTT-3′ (35 (link)); for Bacillus spp., 5′-CAGTAGGGAATCTTCCGCAATG-3′ and 5′-AGCCGTGGCTTTCTGGT-3′ (36 (link)). A universal primer pair for all bacteria was also used: 5′-GTGGTGCACGGCTGTCGTCA-3′ and 5′-ACGTCATCCACACCTTCCTC-3′ (37 (link)).
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3

Immunological Characterization of NLRP3 Inflammasome

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Human lymphocyte separation medium, 4-aminopyridine (4-AP), N-2-hydroxyethylpiperazine-N'-2′-ethanesulfonic acid (HEPES), and K+ asparate were obtained from Sigma-Aldrich (St. Louis, MO, USA). The TRIzol reagent, 5-bromo-4-chloro-3-indolyl phosphate/nitroblue tetrazolium (BCIP/NBT) solution and the reverse transcription kit (catalog no. K1622) were purchased from Thermo Fisher Scientific, Inc. (Waltham, MA, USA). The reverse transcription-quantitative polymerase chain reaction (RT-qPCR) kit (catalog no. 204054) was obtained from Qiagen (Hilden, Germany). In addition, the anti-NLRP3 (catalog no. 13158S; 1:1,000), anti-caspase-1 (catalog no. 3866S; 1:1,000), anti-IL-1β (catalog no. 31202S; 1:1,000) and anti-GAPDH (catalog no. 2118S; 1:1,000) rabbit monoclonal antibodies, as well as the anti-rabbit IgG, alkaline phosphatase-linked secondary antibody (catalog no. 7054S, 1:2,000), were from Cell Signaling Technology, Inc. (Beverly, MA, USA). The IL-1β ELISA kit (catalog no. BMS224/2) was obtained from eBioscience (San Diego, CA, USA), while the FITC-labeled anti-CD3 antibody (catalog no. 340571) and recombinant human IL-2 (rIL-2) were from BD Biosciences (San Jose, CA, USA). The RPMI 1640 culture medium and fetal bovine serum were from GE Healthcare (Chicago, IL, USA). The other patch-clamp associated reagents were obtained from Amresco (Solon, OH, USA).
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4

Quantifying Gene Expression in Colon Tissues

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Total RNA was extracted from proximal colon tissues samples and Caco-2 cells using a QIAGEN RNeasy Mini Kit (QIAGEN, Toronto, Canada) following the manufacturer’s instructions and retrotranscribed by RT-qPCR KIT (QIAGEN, Toronto, Canada). Real-time PCR was conducted with QuantiTect SYBR Green PCR Kit (QIAGEN, Toronto, Canada) on a Rotor Gene 3000 Cycler (QIAGEN, Corbett, Australia) and normalized to β-actin. Primers and reaction conditions for detected genes are given in S1 Table [94 (link)–97 (link)].
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5

One-step RT-qPCR for Hepatitis E Virus Detection

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One-step RT-qPCR targeting highly conserved ORF2/3 sequences [29 (link)] was performed to detect HEV RNA. RNA was extracted using an automated M48 nucleic acid extraction platform (QIAGEN, Valencia, CA) from a 200 µL aliquot of serum sample and eluted in 100 µL. Five microliters of each sample was subsequently tested for HEV RNA by RT-qPCR (Applied Biosystems 7500) in a total reaction volume of 25 µL. Reverse transcription was performed using the QIAGEN RT-qPCR kit at 50°C for 30 minutes, followed by denaturation at 95°C for 15 minutes. Complimentary DNA amplification was subsequently performed for 45 cycles at 95°C for 15 seconds and 60°C for 1 minute. Bile from a monkey infected with HEV genotype 2 served as a positive extraction and PCR control, and HEV RNA from individuals infected with HEV genotype 3 were used as PCR-positive controls.
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