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5 protocols using staurosporine

1

Modulation of Apoptosis Pathways

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Human IFN-β1a was provided by Biogen Inc. Stock solutions for in vitro experiments were prepared in 20 mM sodium acetate, pH 8.4, containing 150 mM arginine hydrochloride. TG02 was provided by Adastra. Staurosporine was purchased from AppliChem, acetyl-Asp-Glu-Val-Asp-7-amino-4-methyl coumarin (ac-DEVD-amc) and benzyloxycarbonyl-Val-Ala-Asp (OMe)-fluoromethylketone (zVAD-fmk) were obtained from Bachem. ON-TARGET plus human siRNA SMART pool targeting human X-linked inhibitor of apoptosis protein (XIAP)-associated factor (XAF)-1 or caspase 3 was purchased from Dharmacon.
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2

Antibody and Reagent Sources for Cell Signaling

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Staurosporine was obtained from AppliChem GmbH (Darmstadt, Germany), caspase inhibitors Z-VAD-FMK and Z-DEVD-FMK as well as recombinant active caspase-3 were obtained from BD Biosciences (Heidelberg, Germany). Monoclonal anti-FLAG® M2 antibody was purchased from Sigma-Aldrich (Taufkirchen, Germany), anti-tricellulin (clone 54H19L38) ABfinity™ rabbit monoclonal antibody was from ThermoFisher Scientific (Darmstadt, Germany), anti-LSR (D3E3N) and anti-βactin (8H10D10) antibodies were obtained from Cell Signaling Technology (Frankfurt am Main, Germany) and anti-PARP (Ab-2) antibody was from Calbiochem (#AM30) (Merck KGaA, Darmstadt, Germany). Rabbit anti-GST antibody was provided by Jürgen Wienands. Goat anti-mouse-HRP and goat anti-rabbit-HRP antibodies were purchased from Sigma-Aldrich (Taufkirchen, Germany) and Alexa-Fluor™594-labeled secondary antibody was obtained from Molecular Probes (ThermoFisherScientific, Darmstadt, Germany). Dilution of the antibodies is summarized in Table 1.
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3

Apoptosis Measurement in Macrophage Cells

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The apoptosis measurements were carried out according to Volling et al. (2007) with minor modifications [22] (link): 2 × 105 MH-S cells were cultivated on 24-well plates and incubated overnight at 37 °C under 5% (v/v) CO2 incubation chamber for adherence. 106 resting, heat-killed, and UV-treated spores from LCV and LCA strains of L. corymbifera were co-incubated with MH-S for 3 h at 37 °C at 5% (v/v) CO2. MH-S cells were washed three times to remove any excess of adherent spores and incubated with 1.5 µM staurosporine (AppliChem, Darmstadt, Germany, A7626) for 16 h to induce apoptosis. The media were removed and the remaining MH-S cells were co-incubated with FITC annexin-V (BioLegend, 640906) and with fixable viability Dye eFluor™ (Thermofisher, 780 65-0865-14) for 15 min in the dark at 4 °C to determine the percentages of apoptotic and necrotic macrophage cells, respectively by flow cytometry (Becton Dickinson LSRII). Three independent biological replicates were conducted.
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4

Heparan Sulfate Exposure in Cardiomyocytes

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Cardiomyocytes were exposed to 10 μg/ml HS (Amsbio, Abingdon, UK) for 16 h. We used unstimulated cells as a negative control, and the cells exposed to 2.5 μM staurosporine as a positive control (AppliChem, Darmstadt, Germany).
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5

Staurosporine-Induced Apoptosis Assay

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Staurosporine (Sigma, S4400, USA) was used to induce apoptosis, which is effectively used in a wide variety of cell types [47] . Firstly, 1 mM Staurosporine stock solution was prepared by dissolving in DMSO (Millipore, 1.02952.2500, USA). Staurosporine stock solution was added to the transfected cell culture at a concentration of 1 × 10 6 cells/mL at final concentration of 1 μM after 48 h of transfection. Cells were incubated with Staurosporine for 48 h. Cell viabilities in the populations were analyzed by trypan blue dye exclusion assay (Applichem, A0668, Germany) on 3, 5, and 7 days after transfection. Also, after counting on the seventh day of culture, LIVE/DEAD cell viability assay kit (Molecular Probes, L3224, USA) was used to visualize cell viability according to manufacturer's instructions at eighth day of transfection which stains the live cells green and dead cells red.
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