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6 protocols using dpbs ca mg

1

Flow Cytometry Characterization of MSCs

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MSCs were characterized via flow cytometry as previously described at the beginning of the second passage32 (link). Briefly, cells were harvested and washed two times with wash buffer (DPBS (Ca-/Mg-) (Gibco, Grand Island, NY), 1% bovine serum albumin (Gibco, Grand Island, NY) and aliquoted into tubes containing 1 × 105 cells in 100 µL wash buffer. Primary antibodies were added to the aliquots according to Supplementary Table 1 and incubated for 30 min in the dark on ice. Tubes were washed twice with wash buffer and centrifuged at 1000 rpm for 2 min at 4 °C. Flow was performed on an Attune NxT Flow Cytometer (Thermo Fisher, Waltham, MA) and analyzed using Attune Nxt software. Percent positive events were determined against samples stained with matching isotype controls.
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2

Apoptosis Assessment of Spermatozoa

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The flow-cytometric method was employed to identify the apoptosis of spermatozoa. For this purpose, fluorescent probes Annexin V-FITC (Annexin V Apoptosis Detection Kit, Canvax, Cordoba, Spain) and propidium iodide (PI; Molecular Probes, Eugene, OH, USA) were used. The assay was performed following the method described by Kuzelova et al. [40 (link)] with slight modifications. Briefly, the semen samples were washed and centrifugated in Dulbecco’s phosphate-buffered saline + Ca; Mg (DPBS + Ca; Mg, Gibco, Waltham, MA, USA) at 600× g for 7 min. The supernatant was discarded, and aliquots of 106 cells were used for staining. Annexin V staining was done according to the manufacturer’s instructions. Immediately prior to analysis, 4 μL of the PI were added to the cell suspension. The cells were evaluated using FACS CaliburTM (BD Biosciences, Franklin Lakes, NJ, USA) and Cell Quest ProTM (BD Biosciences, USA) software. A minimum of 10,000 cells was analyzed for each sample. Cells found in the lower left quadrant (AnV/PI) were identified as live. Cells located within the lower right quadrant (AnV+/PI) were determined as apoptotic. Both upper quadrants (AnV/PI+ and AnV+/PI+) included dead sperm cells [41 (link)]. The evaluation of spermatozoa viability is illustrated in Figure 1.
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3

Cryosectioning and Immunofluorescence Staining Protocol

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Upon ending the experiment, anterior segments were removed from the
chambers, sectioned into quadrants and fixed in 4% Paraformaldehyde/PBS for 6 h
at 4°C. Specimens were then immersed in 10% sucrose/PBS for 6 h,
transferred to 30% sucrose overnight at 4°C and small wedges embedded in
optimum cutting temperature compound (Tissue-Tek, Sakura Finetek, Torrance, CA,
USA). Meridional 10 μm cryosections were dried at room temperature,
rehydrated with DPBS Ca/Mg (Gibco/Life Technologies/ThermoFisher, cat #14040133)
and blocked with 10% goat serum/PBS for 1 h. Subsequently, sections were
incubated with a chicken anti-GFP polyclonal antibody (Aves Laboratories,
Tigard, Oregon, USA cat #GFP-1020) (1:500) overnight at 4°C followed by
incubation with goat anti-chicken Alexa Fluor 594 (Invitrogen/ThermoFisher cat
#A11042) (1:500) at room temperature for 2 h. All antibody solutions were made
in 1% goat serum/0.3% Triton X-100 in PBS. After DPBS Ca/Mg washes, slides were
mounted with DAPI-containing Fluoro-Gel II (Electron Microscopy Science,
Hatfield, PA, USA cat #17985-50). No primary antibody controls were run in
parallel. Images were captured on the IX71 Olympus microscope, DP80 monochrome
camera and cellSens software described above.
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4

Purification of Influenza A Virus

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Confluent monolayers of MDCK cells growing in 175 cm2 culture flasks (Thermo Scientific Nunc; Rochester, NY) were extensively washed with DPBS and infected with 1 infectious dose per cell of egg-grown IAV PR8 in TCID50 medium (Minimum essential medium+GlutaMAX-I, supplemented with 1 mM Hepes pH 7.5, 1 µg/ml trypsin TPCK-treated (Worthington; Lakewood, NJ), and 50 µg/ml gentamycin) for three days at 37°C in a humidified atmosphere of 9% carbon dioxide in air. Cell supernatants were layered on the top of a 20% (w/v) sucrose cushion and ultracentrifuged in a SW38 rotor (Beckman Coulter Inc.; Fullerton, CA) for 4 h at 24,000× g, 4°C. The viral pellet was resuspended in DPBS supplemented with calcium and magnesium (DPBS-Ca/Mg; Gibco), re-layered the on top of a 15–60% (w/v) sucrose gradient, and ultracentrifuged in a SW41 rotor (Beckman Coulter Inc.) for 2 h at 35,000× g, 4°C. Purified IAV PR8 were collected from between the 15% and 60% sucrose interface, ultracentrifuged again to clear residual sucrose, and resuspended in DPBS-Ca/Mg. Viral stocks were stored at 4°C.
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5

hESC Differentiation on Laminin Patterns

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Prefabricated glass coverslips (Arena A, Cytoo) containing 500 µm disk patterns were coated with 10 µg/ml recombinant human laminin 521 (BioLamina) diluted in pre-warmed DPBS (Thermo Fisher Scientific) for 3 h at 37°C. Laminin was then serially washed with DPBS and coverslips were stored in a 35 mm tissue culture plastic submerged in the solution to prevent drying. hESCs were rinsed with DPBS-Mg/-Ca (Thermo Fisher Scientific) and dissociated to single cells with Accutase (Stemcell Technologies). 8×105 cells were seeded on each coverslip in a defined volume of MEF-CM supplemented with 20 ng/ml bFGF (R&D Systems), 10 µM ROCK inhibitor (Y-27632, Abcam), 1× penicillin-streptomycin (Thermo Fisher Scientific) and 100 µg/ml Normocin (InvivoGen), and left unperturbed for 10 min to ensure homogenous distribution across the patterns. ROCK inhibitor was removed from the medium 3 h after seeding and cells were induced the following day with 50 ng/ml BMP4 (R&D Systems), 2 µM IWP2 (Stemgent), 10 µM SB431542 (Stemgent), 100 ng/ml WNT3a (R&D Systems), 6 µM CHIR99021 (EMD Millipore) and/or 100 ng/ml activin (R&D Systems). Fixed samples were analyzed by immunofluorescence 1, 24 or 48 h following induction.
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6

hESC Patterned Differentiation Assay

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Prefabricated glass coverslips (Arena A, CYTOO) containing 500 µm disk patterns were coated with 10 µg/ml recombinant human laminin 521 (BioLamina) diluted in pre-warmed DPBS (Thermo Fisher Scientific) for 3 hours at 37°C. Laminin was then serially washed with DPBS and coverslips were stored in a 35 mm tissue culture plastic submerged in the solution to prevent drying. hESCs were rinsed with DPBS -Mg/-Ca (Thermo Fisher Scientific) and dissociated to single cells with Accutase (STEMCELL Technologies). 8x10 5 cells were seeded on each coverslip in a defined volume of MEF-CM supplemented with 20ng/ml bFGF (R&D Systems), 10 µM ROCK inhibitor (Y-27632, Abcam), 1X Penicillin-streptomycin (Thermo Fisher Scientific), 100 µg/ml Normocin (Invivogen) and left unperturbed for 10 minutes to ensure homogenous distribution across the patterns. ROCK inhibitor was removed from the medium 3 hours after seeding and cells were induced the following day with 50 ng/ml BMP4 (R&D Systems), 2 µM IWP2 (Stemgent), 10 µM SB431542 (Stemgent), 100 ng/ml WNT3a (R&D Systems), 6 µM CHIR99021 (EMD Millipore) and/or 100 ng/ml ACTIVIN (R&D Systems). Fixed samples were analyzed by immunofluorescence 1, 24 or 48 hours following induction.
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