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4 protocols using α tubulin

1

Mitochondrial Protein Expression Analysis

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15 μg of Mitochondrial lysates and supernatant fraction (cytosolic) were resolved by 7% SDS-PAGE for higher molecular proteins and 12% SDS-PAGE for small molecular proteins, then transferred to polyvinylidene difluoride membrane (PVDF). Membranes were blocked with 5% nonfat dried milk in TBST, incubated overnight at 4 °C with the indicated primary antibodies (HA epitope, BioLegend, 1:1000 dilution), SLC4A11 [37 (link)] (Custom, 1:500), TOM20 (SCBT, 1:1000), TIM23 (BD, 1:1000), VDAC (CST, 1:1000), UCP2 (CST, 1:1000), GLS1 (CST, 1:1000), Cytochrome c (Abcam, 1:1000), and α-tubulin (SCBT, 1:1500), washed three times in TBST (138 mM NaCl, 20 mM Tris, and 0.5% Tween 20, pH 7.6) for 10 min each, and incubated with secondary antibodies for 1 h at room temperature. After washing the membrane with TBST three times for 10 min each, the immunoreactive bands were visualized by enhanced chemiluminescence, ECL buffer (#34578, Thermo Fisher Scientific) using Gel Doc XR + system (Bio-Rad, Hercules, CA).
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2

Mitochondrial Protein Expression Analysis

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Whole cells/isolated mitochondria from cells were lysed in ice-cold 1× RIPA buffer (#9806; Cell Signaling Technology) with addition of 1 mM PMSF (#8553; Cell Signaling Technology) immediately before use. Then, 15 µg of lysates for whole cells, mitochondrial or cytosolic fraction (supernatant) was resolved by SDS-PAGEs and then transferred to a polyvinylidene difluoride membrane. Membranes were blocked with 5% nonfat dried milk in TBST and incubated overnight at 4°C with the indicated primary antibodies. Secondary antibodies were applied for 1 hour at room temperature. Primary antibodies used were HA tag (#901501; BioLegend), SLC4A11 (custom33 (link); detects all isoforms SLC4A11-A, SLC4A11-B, and SLC4A11-C; see Supplementary Fig. S4b), HSP90 (#sc-13119; SCBT, Dallas, TX, USA), HSC70 (#sc-7298; SCBT), VDAC (#ab15895; Abcam, Cambridge, MA, USA), ANT (#ab102032; Abcam), RISP (#sc-271609; SCBT), COXIV (#4850; CST, Danvers, MA, USA), TOM70 (#sc-390545; SCBT), α-tubulin (#sc-8035; SCBT), GAPDH (#sc-32233; SCBT), and β-actin (#A5441; Sigma-Aldrich). The immunoreactive bands were visualized by enhanced chemiluminescence, ECL buffer (#34578; Thermo Fisher Scientific), using the Gel Doc XR+ system (Bio-Rad, Hercules, CA, USA).
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3

Western Blot Analysis of DNA Repair Proteins

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Samples for western blot assays were prepared as described previously3 (link). The following primary antibodies were used: Rad51 (diluted 1:2,000; Cat. No. sc-8349; SCBT); Rad54 (diluted 1:2,000; Cat. No. sc-374598; SCBT); PCNA (diluted 1:2,000; Cat. No. sc-56; SCBT); Plk1 (diluted 1:3,000; Cat. No. sc-17783; SCBT); Oct3/4 (diluted 1:3,000; Cat. No. sc-5279; SCBT); Chk2 (diluted 1:3,000; Cat. No. sc-9064; SCBT); α-Tubulin (diluted 1:5,000; Cat. No. sc-8035; SCBT); β−Actin (diluted 1:10,000; Cat. No. ab8226; Abcam); Cyclin A (diluted 1:2,000; Cat. No. sc751; SCBT); CENP-F (diluted 1:1000; Cat. No. ab5; Abcam); γH2AX (diluted 1:2,000; Cat. No. 2577; CST); TopBP1 (diluted 1:3,000; Cat. No. sc-271043; SCBT); and Exo1 (diluted 1:1,000; Cat. No. MS-1534; Thermo Fisher). Immunoblot signals were developed with a WEST-ZOL detection system (Cat. No. 16024; iNtRON Biotechnology). The relative amount of each protein was quantified using ImageJ software.
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4

Comprehensive Protein Analysis in Cell Lines

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TFP, dimethylsulfoxide (DMSO), 3-(4,5- dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT), and 3,3′,5,5′-Tetramethylbenzidine (TMB) were purchased from Sigma (St. Louis, MO). Propidium iodide (PI) was obtained from Fisher Scientific. BDP and antibodies specific to FOXO3 (FKHRL1) N-16 (1:500 dilution) and H-144 (1:1000 dilution), p53-pS15 (1:1000 dilution), c-Myc (1:1000 dilution), α-Tubulin (1:2000 dilution), PARP1 (1:1000 dilution), SOD2 (1:2000 dilution), and Lamin A/C (1:1000 dilution) were purchased from SCBT. Antibody against phospho-H2AX Serine-139 (1:1000 dilution) was obtained from Millipore (Billerica, MA). Specific antibodies against phospho-FOXO3-S318/321 (#9465, 1:250 dilution), Akt-pS473 (1:1000 dilution), Akt (total, 1:1000 dilution), and p27Kip1 (1:1000 dilution) were purchased from Cell Signaling Technology (Danvers, MA). Antibodies against FOXO3 (2071-1 and 3280-1) (1:1000 dilution) were obtained from Epitomics (Burlingame, CA). Antibody against β-Actin (1:3000 dilution) was purchased from Sigma. Antibody against GAPDH (1:1000 dilution), Alexa 488- and Alexa 594-conjugated secondary antibodies were obtained from Thermo-Fisher Scientific (Waltham, MA). Goat anti-mouse IgG and goat anti-rabbit IgG horseradish peroxidase-conjugated secondary antibodies were purchased from Jackson ImmunoResearch (West Grove, PA).
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