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7 protocols using cd45 ko

1

Flow Cytometry-based Plasma Cell Profiling

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The flow-cytometry-based strategy used in this study involved 10 characteristic antibodies, including 8 against cell-membrane proteins (CD138-APC, CD38-APC750, CD19-ECD, CD45-KO, CD56-PC7, CD27-PB, CD81-APC700, and CD117-PC5; from Beckman Coulter, USA), and 2 against cytoplasmic proteins (Kappa-FITC and Lambda-PE; from Dako, Denmark), which have previously been described to be able to differentiate between abnormal and normal plasma cells via flow cytometry [20 (link)–22 (link)]. Sample preparation and detection were performed as previously described [17 ]. Briefly, 200 μL–5 mL BM aspirates [(2–20) × 106 cells] were stained with the monoclonal antibodies for 30 min at 20–30 °C after lysing red-blood cells by using ammonium chloride and then washed with phosphate-buffered saline. For intracellular light-chain evaluation, cells were stained with anti-kappa and anti-lambda antibodies after adding membrane breakers, followed by washing and incubation. Flow-cytometry events were acquired and analyzed using a Navios Flow cytometer (Beckman Coulter, USA). One million nucleated cells were obtained each time, and if ≥ 20 abnormal plasma cells were detected, the result was considered positive.
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2

Isolation of ZIKV NS1 Monoclonal Antibodies

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ZIKV NS1 monoclonal antibodies were isolated from the memory B cell culture method in vitro [15 (link)]. Briefly thawed PBMCs derived from the two ZIKV-infected individuals (on day188 in patient1 and day66 in patient 2) were stained with a panel of fluorescence-labeled Abs (IgD-FITC, CD19-ECD, CD27-PC7, CD38-APCA750, IgM-PB, and CD45-KO Beckman Coulter). Memory B cells gated as IgD IgM - CD27 + CD38 low were sorted into 96-well culture plates (25 to 50 cells/well) and cultured with supplements as described previously [15 (link)]. After 10 days, the culture supernatants were screened for the presence of ZIKV NS1 binding mAbs using capture ELISA described in next paragraph. VH and VL sequences were obtained from positive B-cell cultures by RT-PCR as described [26 (link)] and analyzed using the IMGT/V-Quest program.
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3

Phosphorylated STAT1 and STAT3 Analysis

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Cells were fixed and permeabilized with FIX & PERM Cell Permeabilization Kit (Invitrogen) and subsequently stained with CD45-KO (Beckman Coulter) and p-STAT1-PE or p-STAT3-PE (eBioscience). Samples were measured on the Beckman Coulter CytoFLEX. During analysis, cells were gated on being CD45+ to eliminate debris. Gating on monocyte and lymphocyte populations was done in the forward versus side scatter plot.
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4

Multiparametric Flow Cytometry Panels for Immune Activation and Exhaustion

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Two panels were designed; Immune Activation Panel and Immune Exhaustion Panel. The Immune Activation Panel consisted of the following fluorochrome-coupled monoclonal antibodies: CD3-FITC; CD4-ECD; CD8-PC-7; CD45-KO; CD38-PE and; HLA-DR-APC (Beckman Coulter, MI). The Immune Exhaustion Panel was composed of CD3-FITC; CD4-ECD; CD8-PC7; CD45-KO; CTLA-4-PE and; PD-1-APC. Flow cytometry data acquisition was performed using a Navios flow cytometer (Beckman Coulter). Optimal volatges for acquisition were determined, compensation and fluorescence minus one analyses were performed before testing of study samples. The gating strategy is shown in Additional file 1: Figure S1. Data analysis was performed using Beckman Coulter Kaluza software.
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5

Immune cell profiling using flow cytometry

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Immune cell subset numbers were measured on a Sysmex XN-450 and Sysmex XN-9000 (Sysmex). FACS analysis was performed in one of the two participating study sites, because this method is sensitive to confounders when performed at different sites. A total of 50 μl of whole undiluted blood was incubated for a duration of 15 min in the dark at room temperature with the following antibodies: CD16-FITC (dilution 1:20), CD14-PC7 (1:20), CCR2-BV421 (1:20) (BD Biosciences, Vianen, the Netherlands); CD41-PC5.5 (1:20), CD11b-BV785 (1:20) (ITK Diagnostics BV, Uithoorn, the Netherlands); HLA-DR-PE (1:10), CD56-APC (1:10), CD3-APC-750 (1:10), CD45-KO (1:10), CD36-APC-700(1:10) (Beckman Coulter, Woerden, the Netherlands). Subsequently, 1 ml of lysis buffer (BD Pharm Lyse, BD Biosciences) was added, samples were mixed, incubated for another 10 min and then measured on a flow cytometer (Beckman Coulter FC500). To determine the position of analysis gates, single staining and fluorescence-minus-one control stains were used (Additional file 1: Fig. S1). To analyse the FACS data, Kaluza software (Beckman Coulter, Woerden, the Netherlands) was used.
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6

Flow Cytometry Analysis of Preadipocytes

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Preadipocytes and DFATc from passage 4 were seeded in a 10-cm petri dish in growth medium until confluence. Cells were then washed with PBS, and trypsinized and resuspended (5 × 106 cells/mL) in staining buffer (PBS, sodium azide 0.02%, and serum bovine albumin 0.2%). Cells (100 μL) were incubated 20 min with propidium iodure and the following anti-human primary antibodies: CD31-PB, CD45-KO, CD90-APC, and CD105-PC7 (all from Beckman Coulter). After incubation, cells were washed twice with PBS, centrifuged 5 min at 150g, and resuspended in staining buffer (0.5 mL). Matrix of compensation was generated using VersaComp Antibodycapture Beads kit (Beckman Coulter), according to the manufacturer’s instructions. Data were acquired using Gallios (Beckman Coulter), and analysis was performed using Kaluza analysis software (Beckman Coulter).
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7

Investigating NK Cell Cytotoxicity Against Myeloma Cells

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Cryopreserved PB-MNCs, obtained from healthy donors, were thawed and cultured overnight in RPMI-1640 containing 20% fetal bovine serum and antibiotics (100 units/mL penicillin and 100 μg/mL streptomycin). Next, PB-MNCs were cocultured with UM9 target cells in a 50:1 ratio, in the presence of CD107a-BV421 (Beckton Dickinson), with or without daratumumab 10 μg/mL for 4 or 24 hours. Subsequently, cells were stained with CD45 KO, CD56 PC7, CD138 PE (Beckman Coulter), HLA-DR APC-H7, TIM-3 BV605, CD3 BUV395, and CD16 BUV737 (Beckton Dickinson). LIVE/DEAD Fixable Near-IR Dead Cell fluorescent dye (Invitrogen) was used to determine viability. Degranulation (CD107a positivity) and surface markers were assessed in T cells and NK cell subsets using flow cytometry (LSRFORTESSA instrument, Becton Dickinson).
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