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Micrococcus lysodeikticus cells

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Micrococcus lysodeikticus cells are a type of gram-positive bacteria commonly used in laboratory settings. They are a valuable tool for researchers, as they can be employed in various experimental procedures, such as the assessment of enzymatic activities, particularly those involving lytic enzymes like lysozyme.

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14 protocols using micrococcus lysodeikticus cells

1

Zymographic Analysis of Lysozyme Activity

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The activity of the purified LysZC1 was tested using 0.2% lyophilized Micrococcus lysodeikticus cells (Sigma-Aldrich, St. Louis, MO, USA) as substrate in a 12% SDS-polyacrylamide gel. 20 µg protein was boiled in a SDS sample loading buffer and loaded on the SDS-polyacrylamide gel containing the substrate. After electrophoresis, the gel was washed twice for 1 h with renaturation buffer containing 25 mM Tris-Cl, pH 8.0, and 1% Triton X-100, and incubated in the same buffer at 25 °C for 12 h followed by staining with 1% methylene blue in 0.01% KOH for 1 h and further de-staining with distilled water. The control SDS-PAGE gel was stained with Coomassie Brilliant Blue and de-stained further. BSA and lysozyme were used as negative and positive controls, respectively. The lytic activity of protein bands was observed as a clear zone against a blue background after washing the gel in ultrapure water.
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2

Evaluating Immune Function: Lysozyme Activity and Phagocytosis

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Serum lysozyme (LYZ) activity was evaluated by the turbidimetric assay using lyophilized Micrococcus lysodeikticus cells (Sigma-Aldrich, St. Louis, MN, USA) according to the methodology described by Ellis [43 ] and Mörsky [44 (link)].
Phagocytic activity (PA) and phagocytic index (PI) were calculated in the whole blood samples following the methodology of Kawahara et al. [45 (link)] according to the following equations:

PA = Total No. of macrophages encompassing yeast cells/total No. of macrophages × 100

PI = No. of phagocytized yeast cells/No. of phagocytic cells

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3

Zymogram Assay for Lysozyme Detection

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The zymogram assay was performed as described previously [10 (link)]. SDS-PAGE was run using a 16% gel containing 0.1% (wt/vol) of Micrococcus lysodeikticus cells (Sigma) as substrate. Then, the gel was washed three times by soaking it in water for 10 min. After washing, the gel was incubated in refolding buffer (25 mM tris-HCl at pH 7.0, 1% (wt/vol) Triton-X 100) for 16 h at 37 °C and then washed as before. After that the gel was stained with 0.1% (wt/vol) methylene blue (Acros) in 0.01% (wt/vol) KOH solution for 3 h. The gel was washed overnight with water to remove excess stain.
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4

Lysozyme Inhibition Assay for OBodies

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Assays were carried out in triplicate, using flat-bottomed 96-well untreated ELISA plates (Greiner). OBodies suspended in PBS pH 7.4 were first diluted 1∶2 serially over 11 steps, starting with a final assay concentration of 50 µM. A 25 µL aliquot of each OBody dilution was either added to 25 µL hen egg-white lysozyme (Sigma) at 648 nM (162 nM final concentration in assay) or 25 µL PBS pH 7.4 and allowed to equilibrate at room temperature for 15 min. To each OBody dilution, a 50 µL aliquot of substrate solution containing inactivated Micrococcus lysodeikticus cells (Sigma, M3770) suspended in PBS pH 7.4 was added to a final concentration of 0.4 mg/mL and plates were incubated at room temperature for 45 min before reading the absorbance at 450 nm in a BMG Fluostar Optima plate reader. The data were normalised and processed using Prism v5.04 (Graphpad) software and non-linear regression performed using the following model [Y = Bottom+(Top-Bottom)/(1+10<$>\vskip -3 \raster(60%)="rg1"<$>((LogIC50−X)*HillSlope))] to obtain IC50 values.
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5

Lysozyme Activity Assay Protocol

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A standard lysozyme activity assay was used (Gorin et al. 1971 (link); Grossowicz et al. 1979 (link)). Briefly, lyophilized Micrococcus lysodeikticus cells (Sigma-Aldrich) were suspended in the aptamer selection buffer at an OD450 = 0.6. An aliquot (250 μL) of suspended cells was placed in a microplate tray in which either nothing, HEWL (0.3 μM), RNA, or combination of HEWL and RNA was added (total volume 300 μL). Assay wells were measured for their absorbance at 450 nm for 1 h in a Synergy H4 Hybrid multimode microplate reader (Bio-Tek Instruments).
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6

Turbidimetric Assay for Plasma Lysozyme

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Plasma lysozyme activity was determined by a turbidimetric assay utilizing lyophilized Micrococcus lysodeikticus cells (Sigma, Rowville, VIC, Australia) using a method modified from Cha et al. (2008) (link). Lysozyme from chicken egg white (Sigma, Rowville, VIC, Australia) was used as a standard. In a 96 well plate, 15 µL of plasma samples diluted 1:40 in 0.02 M sodium citrate buffer were added to 150 µL of M. lysodeikticus suspended in 0.02 M sodium citrate buffer at a concentration of 0.2 mg/mL. The absorbance was immediately measured at 450 nm, and subsequent measurements were taken every 5 min for 60 min. A unit of lysozyme activity was defined as the quantity of plasma required to reduce absorbance by 0.001/min (111).
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7

Lysozyme Activity Determination Protocol

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The activity of the conjugates was determined by modifying the lysozyme assay as described in the Worthington Enzyme Manual (15 ). A pre-incubated sample solution (0.05 mL of 1 mg/mL) and 1.45 mL of 0.3 mg/mL Micrococcus lysodeikticus cells (Sigma-Aldrich Co., St. Louis, MO, USA) as a substrate at 25°C were mixed, and its absorbance was measured at 450 nm for 10 min using a spectrophotometer (Cary 60 UV-Vis, Agilent Technologies Inc., Santa Clara, CA, USA). The unit calculation (Unit/mg) of the enzyme is as follows.
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8

Bovine Cytochrome c Purification

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Bovine heart cytochrome c, bovine carbonic anhydrase b and dried Micrococcus lysodeikticus cells were purchased from Sigma. Hen egg white lysozyme (20000 units/mg), yeast cytochrome c, reduced and oxidized glutathione (highly pure), urea (highly pure) and guanidine hydrochloride (highly pure) were purchased from Shanghai Sangon Biological and Technological Service Co., Ltd. All other reagents were of analytical grade without further purification, and all solutions were prepared in bi-distilled water and passed through a 0.22 µm filter.
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9

Turbidimetric Lysozyme Activity Assay

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The lysozyme activity was assessed using the previously described method [52 ,53 ]. Briefly, a turbidimetric assessment utilizing lyophilized Micrococcus lysodeikticus cells (Sigma) was performed. M. lysodeikticus (150 µL) with a concentration of 0.2 mg/mL (in 0.02 M sodium citrate buffer, pH = 5.5) was added to 15 µL sera in a 96-well U-bottom microtiter plate. The initial optical density (OD) was detected at 450 nm instantly after adding M. lysodeikticus, and then, the final OD was measured after incubation for 1 h at 37 °C. Lyophilized hen egg-white lysozyme (Sigma) was used to develop a standard curve. The lysozyme levels were expressed as units·mL−1, with a decrease in absorbance of 0.001 min−1 representing one unit.
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10

Lysozyme-Conjugated Carbon Nanotube Synthesis

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Lyophilized chicken egg white lysozyme (EC 3.2.1.17) was purchased from Inovatech, Inc. (Abbotsford, BC, Canada), and Micrococcus lysodeikticus cells, obtained from Sigma-Aldrich Corporation (St. Louis, MO) as salt-free and dry powder, were used without further purification. Carboxyl single-walled carbon nanotubes (SWCNT-COOH) with outer diameter of 1–2 nm were purchased from MKnano, Canada. MES [2-(N-morpholino) ethane sulfonic acid] buffer, N-ethyl-N’-(3-(dimethyl amino) propyl) carbodiimide hydrochloride (EDC), Tris-hydroxymethyl aminomethane (Tris), N,N methylenebisacrylamide (Bis), acrylamide, sodium dodecyl sulfate, ammonium persulfate, tetramethylethylenediamine (TEMED), 2-mercaptoethanol(2ME), 3,3–5,5 tetrabromophenolsulfonphthalein (Bromophenol Blue) and all other chemicals were purchased from Sigma-Aldrich Corporation and used as received.
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