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67 protocols using exoquick tc kit

1

Exosome isolation and characterization

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Exosomes were isolated from the culture medium of FHC, HCT116 and DLD1 cells by using an ExoQuick TC kit (SBI, USA), and exosomes from the plasma of subjects were purified by using an ExoQuick Plasma Prep with Thrombin kit (SBI, USA). The size distribution of the exosomes was characterized by nanoflow cytometry using a U30 Flow NanoAnalyzer (NanoFCM, Inc., China) with technical assistance provided by KeyGEN Biotech Co. Ltd. (Jiangsu Province, China). The shape and size of the exosomes were observed by transmission electron microscopy (TEM) (Tecnai G2, FEI, USA). Moreover, the characterization of the exosomes was confirmed by the presence of exosomal protein markers TSG101 (# ab125011, Abcam, USA) and Alix (# 92880, CST, USA). The green fluorescent dye PKH67 (Umibio, China) was utilized to label exosomes isolated from the culture medium of cells. After dye was incubated with recipient cells for 3 h, fluorescence microscopy (Zeiss, Germany) was performed to visualize PKH67-labelled exosomes in recipient cells. The detailed procedures were described in our previous study [27 (link)].
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2

Extracellular Vesicle Isolation from Conditioned Media

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EVs were isolated via ASC-CM centrifugation at 4000 g for 30-min through a 100 kDa centrifuge filter (same as above) followed by washing with PBS and re-centrifugation at 4000 g for 5-min through the 100 kDa filter, for a total of 3x washes. EVs were precipitated from the remaining “ > 100 kDa” concentrate overnight using a ExoQuick-TC kit (SBI; Cat. # EXOTC10A-1), per the manufacturer’s protocol. EV were resuspended in PBS and aliquots were removed and used to quantify protein content as an indirect measure of EV content via QuickDrop, BCA, and Bradford (Coomassie). Relative EV protein fraction was compared to total protein within “ > 100 kDa” and “Full” ASC-CM fractions. Additionally, purified EV samples were then evaluated via Nanoparticle Tracking Analysis (NTA; Malvern Panalytical; Nanosight LM10) to further determine both concentration and size distribution of particles extracted from the ASC-CM, with exosomes typically ranging from 25 to 250 nm (n = 4). Unused (not exposed to cells) serum-free ASC media underwent the same processing and was used to establish/determine baseline EV/particulate levels, which were negligible. EV particle counts of serum-free control ASC media were negligible and did not warrant a full workup, thus only a comparative analysis between 2 and 3D was fully conducted.
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3

Exosome Isolation and Functional Analysis

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At 70–80% cell confluence, the basal medium was replaced for cell culturing and the NF and CAF supernatants were collected after another 48 h. Cells were removed by centrifugation at 2000 rpm for 5 min, and cellular debris was removed using a 0.22-μm filter. Exosomes were then isolated from the supernatant using the Exoquick-TC kit (SBI, CA, USA). The obtained exosomes were resuspended in PBS and stored at − 80 °C after aliquotting. A bicinchoninic acid kit was used to determine the concentration of exosomes. To analyze the effect of CAF exosomes on MMECs, 2 µg of exosomes was added to 1 × 105 MMECs for at least 48 h.
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4

Exosome Isolation and Characterization

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An Exo Quick-TC kit (SBI, USA) was used to collect BMSC-derived exosomes based upon provided directions. Transmission electron microscopy (Libra 120; Zeiss, Oberkochen, Germany) was conducted to assess exosomal ultrastructure, while western blotting was used to detect the exosomal markers CD9, CD63, and TSG101 (Abcam, UK).
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5

Isolation and Labeling of Extracellular Vesicles

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The medium of cultured NSCs was collected every other day and centrifuged at 1500 g for 10 min at 4 °C followed by 10,000 g for 30 min at 4 °C to remove cells, membranes, and debris. The resulting medium was then filtered through 0.22 μm filters. EVs were isolated using the ExoQuick-TC kit (SBI, Mountain View, California, USA). The EVs were confirmed by transmission electron microscopy (TEM). To label the EVs and track the internalization, we transfected EVs with Texas-red labelled RNA oligonucleotides using an Exo-Fect exosome transfection kit (System Bioscience, Palo Alto, CA, USA) following the manufacturer’s instruction.
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6

Exosome Isolation from ADSC Transfected with miR-216a-5p

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ADSCs were transfected with a plasmid encoding miR-216a-5p using Lipofectamine 2000 (Invitrogen). After 48 h of miRNA transfection, exosomes were isolated from ADSC supernatant using an ExoQuick-TC Kit (SBI) according to the manufacturer’s instructions. The protein content of the exosomes was measured using a BCA™ Protein Assay Kit (Beyotime, Nantong, China).
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7

Isolation and Characterization of Extracellular Vesicles

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SCC-15/DDP and CAL-27/DDP cells were cultured in exosome-depleted FBS (SBI, Palo Alto, CA, USA) for 2 days and then the supernatant was harvested for EVs isolation using ExoQuick-TC Kit (SBI) according to manufacturer’s instructions. The extracted EVs were dissolved in PBS and further verified by transmission electron microscope (TEM) (Hitachi, Tokyo, Japan), NanoSight LM10 instrument (Malvern Panalytical, Malvern, UK) and western blotting. The image analysis of nanoparticle tracking analysis (NTA) software suite was used to automatically track particle size, and five video times of 60 s were taken for each sample. Data were analyzed using the NTA 3.0 software, and hydrodynamic diameters of each particle were calculated using the Stokes–Einstein equation: D = kT/6πηr, where D is the diffusion coefficient, k is Boltzmann’s constant, and T is the absolute temperature, r is the radius of the particle, and η is the viscosity of the fluid, which means a spherical particle moving with the uniform velocity in a continuous fluid. Another portion of EVs were lysed in Trizol (Invitrogen) for extracellular RNA isolation and lysed in RIPA (Beyotime) for EVs protein isolation. Some EVs were incubated with 1 μg/mL RNase A (Sigma-Aldrich, Cambridge, MA, USA) alone or together with 0.1% Triton X100 (Beyotime) for 30 min prior to EVs RNA isolation.
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8

Extracellular Vesicle Isolation and Characterization

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EVs were isolated via ASC-CM centrifugation at 4,000 g for 30-min through a Vivaspin 20 MWCO 100,000 kDa centrifuge cutoff filter (Cytiva; Cat. # 28932363) followed by washing with PBS and re-centrifugation at 4,000 g for 5-min through the 100-kDa filter, for a total of 3 washes. EVs were precipitated from the remaining >100-kDa concentrate overnight using a ExoQuick-TC kit (SBI; Cat. # EXOTC10A-1), per the manufacturers protocol. The EV samples (n = 3) were resuspended in PBS and aliquots were removed and used to quantify relative protein content as an indirect measure of EV content via Pierce™ BCA Protein Assay Kit (Invitrogen; Cat. #23225), QuickDrop (Molecular Devices; SpectraMax QuickDrop Micro-Volume Spectrophotometer) quantification via absorbance at 280-nm, and Pierce™ Coomassie “Bradford” Protein Assay Kit (Invitrogen; Cat. # 23200). Purified EV samples were also evaluated via Nanoparticle Tracking Analysis (NTA; Malvern Panalytical; Nanosight LM10) to further assess particle concentrations and size distributions.
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9

Exosome Isolation and Characterization from BMSCs

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Extraction of the exosomes from BMSCs culture media was performed using ExoQuick-TC kit (SBI, USA) by following the prescribed protocol. A transmission electron microscope (Libra 120; Zeiss, Oberkochen, Germany) was employed to observe the exosomal ultrastructure. The antibodies against CD9, TSG101 and CD63 (Abcam, UK) are the representative exosome markers that were identified using western blotting.
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10

Exosome Isolation from FDMSCs

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The exosomes were isolated using an ExoQuick-TC kit (SBI, USA) following the instruction. In brief, approximately 80% confluent FDMSCs were washed with PBS twice and cultured for an additional 48 hours in serum-free medium (SFM) containing 1% 100 U/ml Penicillin-Streptomycin. The CM (conditioned media) was collected and centrifuged at 3,000 × g for 15 minutes to remove cells and cell debris. The supernatant was filtered using a 0.22 μm filter sterilized SteritopTM (Millipore, USA), and then the supernatant was transferred to an Amicon® Ultra-15 10K Centrifugal Filter Unit (Millipore, USA) to concentrate to 1/5 volume. Appropriate volume of ExoQuick-TC was added in the supernatant in a ratio of 1 : 5 and mixed with the supernatant. After storing at 4°C overnight, the mixture was centrifuged at 1500 × g for 30 minutes to collect the exosomes. The exosomes were quantitated using the BCA Protein Assay Kit (Beyotime, China) following the manufacturer's protocol. The morphology of the exosomes was observed using a FEI Tecnai G2 Spirit transmission electron microscope (TEM, FEI, USA) after being fixed with 2% glutaraldehyde and counterstained with 4% uranyl acetate. The exosome markers, CD63, Alix, and Tsg101, were detected by Western blot using the specific antibodies. The diameter of exosomes was measured by a ZetaView Nanoparticle Tracking Microscope (Particle Metrix Inc., USA).
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