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15 protocols using anti igf1rβ

1

Quantitative Protein Analysis in Cell Lines

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Total proteins were harvested from tissue and cell lines lysates using M-PER protein extraction reagent (Thermo Fisher, USA) respectively supplemented with proteinase and phosphatase inhibitors (Sigma, USA) according to standard protocol. Protein concentrations were determined using the BCA method followed by standard western immunoblotting of proteins using different primary antibodies: Anti-METTL3 (#195352, abcam, USA), Anti-METTL14 (#HPA038002, Sigma, USA), Anti-FTO (#ab124892, abcam, USA), Anti-P21 (#ab109199, abcam, USA), Anti-Phospho-AKT (#9271, Cell Signaling, USA), Anti-AKT (#9272, Cell Signaling, USA), Anti-Phospho ATM (#4526, Cell Signaling, USA), Anti-ATM (#2873, Cell Signaling, USA), Anti-Phospho-IR/IGF1R (#3021, Cell Signaling, USA), Anti-IGF1Rβ (#9750, Cell Signaling, USA), Anti-IRβ (#3025, Cell Signaling, USA), Anti-PDX1 (#5579, Cell Signaling, USA), Anti-Pan-Calcineurin A (#2614, Cell Signaling, USA), Anti-SHP-2 (#3397, Cell Signaling, USA), Anti-β-Actin (#4970, Cell Signaling, USA), Anti-αTubulin (#7291, abcam, USA). (Please see Reporting Summary for further details on antibodies used). The blots were developed using chemiluminescent substrate ECL (ThermoFisher, USA) and quantified using Image studio Lite Ver. 5.2 software (LICOR, USA).
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2

Quantitative Western Blot Analysis of Protein Markers

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Cell lysates were prepared in RIPA buffer supplemented with protease/phosphatase inhibitor cocktail (Thermo Fisher Scientific, Waltham, MA, USA). Protein lysates (25–35 μg/lane), as determined by BCA protein assay (Life Technologies), were then separated by SDS-PAGE (NuPAGE; 4%–12% Bis-Tris gels; Invitrogen) and transferred on to a nitrocellulose membrane that was probed with anti-FGFR4 (Cell Signaling Technology, cat. #8562), anti-IGF-1Rβ (Cell Signaling Technology, cat. #9750), anti-MYOD1 (Cell Signaling Technology, cat. # 13812), anti-FOXO1 (Cell Signaling Technology, cat. #2880) and anti-β-Actin (Cell Signaling Technology, cat. #4967) primary antibodies followed by anti-rabbit IgG, HRP-linked secondary antibody (Cell Signaling Technology, cat. #7074) before detection using an iBright CL1000 imaging system (Thermo Fisher Scientific, MA, USA). iBright analysis software was used for quantification of the intensity of bands of interest.
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3

Protein Expression and Signaling Analysis

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Once whole cell or nuclear and non-nuclear protein fractions were obtained, the protein concentration in the supernatants was determined using Bradford reagent. Fifty micrograms of proteins was resolved by SDS-PAGE and transferred to polyvinylidene fluoride membranes. Blots were blocked and probed with various antibodies: anti-IGF1R β (#3027), anti-pIGF1R β (#3918), anti-AKT (#9272), anti-pAKT (#9271), anti-MAPK 42-44 (#9102), anti-pMAPK 42-44 (#9101), anti-S6K (#2708), anti-pS6K (# 9205), and anti-β actin (#4970) from Cell Signaling Technology (Boston, MA, USA); anti-lamin B (SC-6217) from Santa Cruz Inc. (Dallas, TX, USA); anti-pPDC subunit E1-α (NB110-93479) and ACSL5 (H00051703-M01) from Novus Biologicals (Centennial, CO, USA); anti-FAS (610962) from BD Biosciences (San Jose, CA, USA); and anti-GAPDH (MAB374) from Millipore (Darmstadt, Germany).
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4

Ligands and Inhibitors for Cell Signaling

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Des[1–3]IGF-1 and recombinant human epidermal growth factor (EGF) were obtained from Cell Sciences (Canton, MA). alamarBlue, Dulbecco modified Eagle’s medium (DMEM)/F-12 media with HEPES, Roswell Park Memorial Institute (RPMI) 1640 media, and fetal bovine serum were obtained from Invitrogen (Carlsbad, CA). Hydrocortisone was purchased from Sigma–Aldrich (St. Louis, MO). OSI-906 and BMS754807 were obtained from Chemietek (Indianapolis, IN). Gefitinib, lapatinib, crizotinib, and cederanib were obtained from LC Laboratories (Woburn, MA). Dasatinib, BMS599626, NVP-BEZ235, PF-04691502, XL-147, MKK2206, GSK690693, temsirolimus, AT7867, foretinib, panobinostat, SAHA, diclofenac, serdemetan, and YM-155 were obtained from Selleck Chemicals (Houston, TX). PF-4708671 was obtained from Santa Cruz Biotechnology (Dallas, TX). PP242 was kindly provided by Dr. Michael Harding (University of Virginia, Charlottesville, VA). Anti-IGF-1Rβ, anti-AKT, anti-pAKT (S473), anti-pAKT (T308), anti-EGFR, and anti-pEGFR, were obtained from Cell Signaling Technology (Beverly, MA). Anti-pIGF-1R/pIR (Y1158/Y1162/Y1163) was obtained from Millipore (Bill-erica, MA).
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5

Protein Expression Analysis for Cell Signaling

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Tissues and cells were homogenized. Solubilized proteins in lysis buffer (0.1 M Tris–HCl (pH 6.8), 4% SDS, 20% glycerol, 12% 2‐mercaptoethanol, and BPB) were subjected to SDS–PAGE, and proteins were electrotransfered to nitrocellulose membranes. Immunodetection was carried out using an ECL kit (GE Healthcare) according to the manufacturer's protocol. Antibodies used were as follows: anti‐β‐catenin (1:5,000, BD, #610154), anti‐P‐β‐catenin (1:2,000, Cell Signaling Technology, #4176), anti‐active‐β‐catenin (1:2,000, Cell Signaling Technology, #19807), anti‐PTEN (1:2,000, Cell Signaling Technology, #9559), anti‐P‐PTEN (1:2,000, Cell Signaling Technology, #9554), anti‐AKT (1:1,000, Cell Signaling Technology, #9272), anti‐P‐AKT (1:1,000, Cell Signaling Technology, #9271), anti‐IGF‐1Rβ (1:1,000, Cell Signaling Technology, #3018), anti‐P‐IGF‐1Rβ (1:1,000, Cell Signaling Technology, #4568), and anti‐HSC70 (1:2,000, Santa Cruz Biotechnology, #sc7298).
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6

Western Blotting Antibody Panel for Akt Signaling

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Anti-Akt1, anti-Akt2, anti-Akt3, anti-phospho-Akt S473 (pAkt), anti-phospho-Akt1 S473 (pAkt1), anti-phospho-Akt2 S474 (pAkt2), anti-Bax, anti-p53, anti-PUMA, anti-IGF1Rβ, anti-pGSK3β, anti-GSK3β, anti-p21, anti-PRAS40, anti-pPRAS40, anti-HA and anti-active caspase 3 antibodies were obtained from Cell Signaling Technology. Anti-β-actin antibody was purchased from Sigma-Aldrich. Anti-p85 polyclonal antibody was generated in-house and has been described (51 (link)). Horseradish peroxidase-conjugated anti-mouse and anti-rabbit immunoglobulin G (IgG) antibody were purchased from Chemicon.
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7

IGF-1 Signaling Pathway Regulation

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Recombinant CYR61 and SP600125 were purchased from Sigma-Aldrich (Lyon, France), recombinant IGF-1 was purchased from R&D Systems (Lille, France).
Neutralizing anti-IGF1 antibody was purchased from R&D Systems. Rabbit polyclonal anti-CYR61 and anti-pIGF1Rβ were purchased from Abcam (Cambridge, UK), anti-Actin was purchased from Sigma Aldrich and anti-IGF1Rβ, anti-pGSK3β, anti-pJNK, anti-JNK were purchased from Cell Signaling Technology (Saint Quentin en Yvelines, France). Mouse monoclonal anti-E-cadherin was purchased from Santa Cruz Biotechnologies (Santa Cruz, CA, USA), anti- GSK3β was purchased from Cell Signaling Technology, and anti-IGF1 was purchased from R&D Systems.
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8

Antibody Sourcing and Characterization

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Anti-NDRG1 antibody was generated as previously described [43 (link)]. Other antibodies were purchased as follows: anti-α-tubulin antibody was from Sigma-aldrich Co; anti-EGFR, anti-phospho-EGFR (Tyr1068), anti-phospho-HER3, anti-Met, anti-phospho-Met, anti-PDGFRβ, anti-phospho-PDGFRβ, anti- IGF-1Rβ, anti-phospho-IGF-1Rβ, anti-ERK1/2, anti-phospho-ERK1/2, anti-AKT, anti-phospho-AKT (Thr308 and Ser473), anti-mTOR, anti-phospho-mTOR (Ser2448 and Ser2481), anti-Raptor, anti-Rictor, anti-S6K, anti-phospho-S6K(Thr389), anti-phospho-S6, anti-PTEN, anti-phospho-PTEN, anti-IRS-1, anti-PDK1, anti-PARP, anti-phospho-PDK1, anti-TSC-1, anti-TSC-2, and anti-phospho-4EBP-1 antibodies were from Cell Signaling Technology (Beverly, MA); anti-HER2 and anti-HER3 antibodies were from Santa Cruz Biotechnology (Santa Cruz, CA); anti-glyceraldehyde-3-phosphate dehydrogenase (GAPDH) antibody was from Trevigen Inc. (Gaithersburg, MD): anti-p27 antibody was from BD Biosciences (San Jose, CA): anti-cleaved PARP antibody was from Promega (Madison, WI): anti-phospho-HER2 antibody was from Millipore (Billerica, MA): anti-β-actin was from Abcam (Cambridge, UK).
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9

Immunoblotting Analysis of Insulin and IGF-1 Receptors

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All samples were analyzed by SDS-PAGE on 8% acrylamide gels and transferred to polyvinylidene fluoride (PVDF) membrane (Millipore). Primary antibodies used were anti-SBP-tag (Millipore, MAB10764, Clone 20, 1:1000 dilution), Anti-IRα (Santa Cruz, sc-7953, H-78, 1:500 dilution), Anti-IRβ (Cell Signaling, #3025, 4B8, 1:1000 dilution), Anti-IGF1Rα (Santa Cruz, sc-271606, G-5, 1:1000 dilution), Anti-IGF1Rβ (Cell Signaling, #14534, D4O6W, 1:1000 dilution), Anti-pYpY (IR phosphorylated Tyr1162/1163 and IGF1R phosphorylated Tyr1135/1136, Calbiochem, 407707-10 T, 1:1000 dilution). Secondary antibodies used were horseradish peroxidase conjugated antibodies of either rabbit IgG (GE Healthcare Life Sciences,1:10,000 dilution) or mouse IgG (GE Healthcare Life Sciences, 1:10,000 dilution). Lastly, membranes were incubated with Western blotting substrate (Thermo Scientific Pierce ECL) and exposed to autoradiographic film (BioExcell).
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10

Protein expression analysis by Western blot

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Western blot analysis was performed as described previously [5 (link),6 (link)] using anti-occludin (NBP1-87402) obtained from Novusbio, Total OXPHOS Rodent WB Antibody Cocktail (ab110413) and anti-PGC-1α (ab54481) obtained from Abcam (Cambridge, UK), anti-HSP60 (sc-376240) obtained from Santa Cruz and anti-phospho-SAPK/JNK (Thr183/Tyr185) (#9251), anti-JNK2 (#9258), anti-SOD2 XP (#13141), anti-SIRT3 (#5490), anti-phospho-AKT (Ser473) (#9271), anti-AKT (#9272), anti-IRβ (#3025) and anti-IGF-1Rβ (#3027) antibodies, as well as the secondary antibodies anti-rabbit antibody (#7074) and anti-mouse antibody (#7076) obtained from Cell Signaling (Cambridge, UK). Ponceau staining served as a loading control. Oxyblot analysis was carried out as previously published [33 (link)] with anti-DNP antibody after membrane derivatization (D9656, Sigma-Aldrich, Taufkirchen, Germany). Specific bands were detected by using a chemiluminescence reagent in the ChemiDoc™ Imaging System with ImageLab software (Bio-Rad, Munich, Germany). Band intensities were quantified via densitometric analysis using Image Lab 5.2.1 and Image J software and were normalized to protein content exemplified by Ponceau staining or total unphosphorylated proteins (JNK and AKT phosphorylation).
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