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65 protocols using power block

1

Immunohistochemical Analysis of TGF-β1 in IMCD Cells

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IMCD cells (5000 cells/well) were seeded on BD multichamber slides and underwent the gradual increase in osmolarity as described above. At 330, 600 and 900 mOsm, cells were washed with ice-cold PBS and fixed with 4% paraformaldehyde for 30 min at room temperature. After washing with PBS, cells were blocked using 1× Powerblock (Biogenex, San Ramon, CA, USA) for 10 min and incubated with rabbit polyclonal TGF-ß1 antibody (1:50 in PBS, Santa Cruz) overnight at 4C. The slide was carefully washed twice with PBS and incubated with secondary antibody (Rabbit Link, Biogenex) for 30 min, washed and developed with Fast Red (Dako). Nuclei were counterstained with hematoxylin solution, then slides were mounted using Aquatex (Merck) and analyzed under light microscope.
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2

Multiplex Immunohistochemistry of Immune Cells

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Tissue sections were deparaffinized in xylene and hydrated with ethanol gradations and water. Ly6G, CD20 and CD3 epitopes were retrieved by the heat-induced antigen retrieval method using 10 mM citrate buffer (pH 6). Endogenous peroxidase activity was blocked using 0.3% hydrogen peroxide and then subsequently blocked with 1× Power Block (BioGenex). Sections were then incubated with primary goat anti-mouse IgG CD20 antibody (clone M-20, Santa Cruz Biotechnology), rat anti-mouse IgG Ly6G antibody (clone 1A8, BioLegend) and rat anti-mouse IgG CD3 antibody (clone 17A2, BioLegend) at a 1:100 dilution overnight at 4°C in Power Block. Sections were then washed with PBS-0.05% Tween 20 and incubated with biotinylated secondary antibodies (goat anti-rat IgG, BD 559286; rabbit anti-goat IgG, BA-5000, Vector Laboratories) at a 1:100 dilution for 45 min. Streptavidin horseradish peroxidase (BioGenex, HK3305K) was used to label the secondary antibody for immunodetection by DAB chromogen (Biogenex). After counterstaining with Mayer's Hematoxylin (BioGenex), the samples were dehydrated with ethanol gradations, dipped in xylene and mounted using Cytoseal (Thermo Scientific).
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3

Cryosectioning and Immunofluorescent Staining

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Frozen samples were sectioned at 10 μm using CryoJane (Leica Microsystems). The slides were blocked in 1× Power Block (BioGenex) in PBS at room temperature for 1 h, then stained with primary antibody diluted in blocking buffer overnight at 4 °C. The next day, the slides were washed in PBS 3 × 5 min, incubated in secondary antibody in blocking buffer for 1 h at room temperature, and washed in PBS 3 × 5 min before mounting with DAPI (Vectashield). The primary antibodies used were goat anti-GFP (FITC) (1:200; abcam) and rabbit anti-beta galactosidase (abcam). Anti-Rabbit-AlexaFluor488 (Life Technologies) was used for the secondary antibody for immunofluorescent staining.
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4

Immunohistochemical Analysis of Cellular Markers

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Slides were deparaffinized and hydrated. The antigen retrieval step was done by submerging slides in sodium citrate (pH 6) (Vector Laboratories H-3300). Sections were blocked for 5 min with 1× power block (Biogenex) and then incubated with primary antibody. Next, a secondary antibody (SignalStain Boost IHC detection reagent HRP, rabbit 8114) was added. Once counterstain was deemed sufficient, samples were dehydrated and immediately mounted. Scanned slides were analyzed using the Halo software (details are in the Supplemental Material).
The primary antibodies used were Ki67 (1:50 rabbit mAb; Cell Signaling 12202), cleaved caspase 3 (1:200 rabbit mAb; Cell Signaling 9661), ERα (1:200 rabbit mAb; Santa Cruz Biotechnology 543 ), and Sox9 (1:400 rabbit mAb; Abcam 3697). All staining was done on formalin-fixed paraffin embedded tissue.
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5

Neuromuscular Junction Visualization

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TVA muscles were dissected and stained for neurofilament-M (NFM) and motor endplates (MEP) as described before (38 (link)). Briefly, mice were euthanized and TVA muscles were dissected and fixed in 2% PFA in PBS for 10 min at room temperature. Samples were permeabilized in 0.3% Triton X-100 in PBS for 30 min and blocked in 1X Power Block for 10 min at room temperature (BioGenex, Fremont, CA). Then, the samples were incubated with a mouse anti-neurofilament-M antibody and a mouse anti-SV2 antibody (Developmental Studies Hybridoma Bank, Iowa City, IA) in 1% BSA and 0.3% Triton X-100 in PBS overnight at 4 °C. Samples were incubated with Alexa Fluor 488 goat anti-mouse IgG (Life Technologies, Carlsbad, California) for 1 h at room temperature. MEPs were counterstained with tetramethylrhodamine (TRITC) conjugated alpha-bungarotoxin (Life Technologies, Carlsbad, California). TVA muscles were whole-mounted on microscope slides using Dako Fluorescent mounting media. Images were taken using a confocal LSM510 Zeiss microscope (Plan-APOCHROMAT 63X/1.4 oil DIC) and were quantified using ImageJ software.
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6

Immunohistochemistry for Cardiac Myosin

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Immunohistochemistry procedures were performed as previously described [47 (link)]. In short, tissues were blocked overnight in 1% goat serum in Power Block (BioGenex, Fremont, CA, USA). Biotinylated goat anti-rabbit IgG (10 µg/mL) (Sigma-Aldrich, St. Louis, MO, USA) or-PBS negative control as well as positive control rabbit anti-cardiac myosin sera (Cunningham laboratory) at 1:2000 dilution in PBS were incubated with tissues, followed by streptavidin incubation and Fast Red detection with a counterstain of Mayer’s hematoxylin. The positive control sera were produced via the hyperimmunization of New Zealand White rabbits with purified human cardiac myosin prepared and analyzed using standard methods in the Cunningham laboratory.
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7

Immunohistochemical Analysis of FAM84B

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Four-μm sections were cut from the paraffin-embedded tissue samples. Antigen retrieval was performed using Trilogy™ (Cell Marque, Rocklin, CA) at 121 °C for 10 minutes. The sections were treated with 3% hydrogen peroxidase to quench endogenous hydrogen peroxidase activity, treated with Power Block (BioGenex, San Ramon, CA) for 20 minutes to block nonspecific reactions to other antigens, incubated with the commercial FAM84B rabbit polyclonal antibody (1:100; Proteintech Group, Chicago, IL) overnight at 4 °C, stained with diaminobenzidine (DAB) (BioGenex), washed additional times, and counter-stained with hematoxylin for 3 minutes. The staining intensity was scored from 0 to 3+ as follows: 0, no staining; 1+, weak staining; 2+, moderate staining; 3+, strong staining. High intensity was defined as staining intensity of 2 ~ 3+ and 3+, and low intensity was defined as staining intensity from 0 to 2+.
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8

Nrf2 Activation and Glutathione Assays

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Reagents were obtained from the following sources: unlabeled amino acids (Sigma-Aldrich; St. Louis, MO, USA); TRIzol and Lipofectamine 2000 (Invitrogen-Gibco; Carlsbad, CA, USA); GeneAmp RT-PCR kit (Applied Biosystems/Life Technologies; Carlsbad, CA, USA); Taq polymerase kit (TaKaRa; Mountain View, CA, USA); Power Block (Biogenex; San Ramon, CA, USA); GSH-Glo Glutathione Assay Kit, pUIIR3-EGFP and pGL3-Basic vectors (Promega; Madison, WI, USA); rabbit polyclonal anti-human Nrf2 antibody (AbCam; Cambridge, MA, USA); Fluoromount mounting media (Sigma, St. Louis, MO, USA); Enhanced ChemiLuminescence kit (PerkinElmer Life Sciences, Waltham, MA, USA); Bio-Rad RC DC protein assay kit (Bio-Rad; Hercules, CA, USA); Pierce Pinpoint Cell Surface Isolation kit (Thermoscientific; Rockford, IL, USA); and [3H]-glutamate and [3H]-taurine (Perkin Elmer Life Sciences; Boston, MA, USA). Rabbit polyclonal anti-xCT antibody was a generous gift from Dr. Sylvia B. Smith [17 (link)]. Culture media and supplements, goat anti-rabbit Alexa Fluor 568 secondary antibody, and Hoechst 33342 stain were from Invitrogen-Gibco (Carlsbad, CA, USA).
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9

Immunofluorescence Staining of Endothelial Markers

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Cells were washed with PBS and fixed with 4% paraformaldehyde. After multiple wash steps with PBS and blocking of non-specific binding with Powerblock (Biogenex, San Ramon, CA), antigen detection was performed with mouse anti-human CD31-PE and VEGFR2-FITC conjugated antibodies (BD Biosciences). Cell nuclei were counterstained with DAPI mounting medium (Vector Laboratories, Burlingame, CA). Standard immunofluorescence imaging was performed on a Zeiss Axioplan 2 microscope (Cark Zeiss Microimaging, Thornwood, NY). Images were prepared for publication using Photoshop (Adobe, San Jose, CA).
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10

Immunohistochemical Staining of TDP-43 in Brain Regions

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Immunohistochemical staining for TDP-43 was performed on 6
μm-thick sections of paraffin-embedded samples of
the middle frontal gyrus (FC) and the mesial temporal lobe at the level of the
lateral geniculate body. Following heat antigen retrieval in pH 6.0 citrate
buffer and blocking for 10 minutes (Power Block, BioGenex, Fremont, CA), slides
were incubated with primary antibody against TDP-43 (TARDBP
#10782–2-AP, 1:200; Proteintech Group, Chicago, IL) (Montine et al., 2012 (link)) for
one hour at room temperature followed by incubation with biotinylated rabbit IgG
secondary antibody (1:200; Vector Laboratories, Burlingame, CA). Slides were
developed with ABC Elite and Nova Red kits (Vector Laboratories) following the
manufacturer's directions and counterstained with hematoxylin. The DG
and FC were evaluated for the absence or presence of TDP-43 positive neuronal
cytoplasmic inclusions, neuronal intranuclear inclusions, and dystrophic
neuritis (Figures 1 and 2 respectively). Data were extracted from the database
of the ADRC neuropathology core.
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