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6 protocols using anti tnfα clone mab11

1

Murine and Human T Cell Immunophenotyping

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For murine T cell work, we used the following BD Bioscience antibodies: mouse Fc-Block, anti-CD4 (clone RM4-5), anti-CD8a (clone 53-6.7), anti-IFNγ (clone XMG1.2), and anti-TNFα (clone MP6-XT22). For human T-cell staining, we used the following BD Bioscience antibodies: anti-CD4 (clone RPA-T4), anti-NGFR (clone C40-1457), anti-IFNγ (clone B27), and anti-TNFα (clone MAb11). The anti-CD8a clone OKT8 from eBiosciences was also used. Recombinant human HER2-Fc (R&D Systems) was used to stain for HER2-CAR expression on both murine and human T cells and detected with goat-anti-human IgG (Jackson ImmunoResearch, West Grove, PA). Intracellular staining were performed using the cytofix/cytoperm reagent and associated protocol (BD Biosciences). T-cell viability was evaluated using the Molecular Probes LIVE/DEAD Fixable Near-IR kit (Life Technologies). Results were acquired on a FACSCanto or LSRII (BD Biosciences) and analyzed using FlowJo software (FlowJo, Ashland, OR).
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2

Cytokine Production in Stimulated B Cells

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PBMCs from healthy individuals were stimulated by CpG (10 µg/mL) for 24 h. PMA and ionomycin were then added for the last 4 h of culture and BFA (10 µg/mL, Sigma Aldrich) was added for the last 2 h. PBMCs were then stained using FITC or V450-conjugated anti CD19 (clone HIB19, BD Pharmingen) and Fixable Viability Dye eFluor 506 (Thermofisher) before fixation (cytofix/cytoperm buffer BD biosciences) and permeabilization (Perm wash buffer, BD Pharmingen). Intracellular staining for IL-10, IFNγ, and TNFα was then performed using APC-conjugated anti IL-10 (clone JES3-19F1, BD Pharmingen) and PeCy7-conjugated anti-IFNγ PeCy7 (4SB3, BD Pharmingen) or anti-TNFα (clone MAb11, BD Pharmingen). Percentages of IFNγ and TNFα positive cells among B10+ and B10neg cells were measured by flow cytometry, using FACS CANTO II (BD biosciences). Gating strategy and representative flow cytometry dot plot are shown in Figure S2 in Supplementary Material. We also measured cytokines concentrations in supernatants from isolated B10+ and B10neg cells. To do this, B10+ and B10neg cells were sorted as described above, and kept in culture for 24 h. Then, cytokine dosages in supernatants were performed using Human IFN-γ ELISA MAX Deluxe and Human TNF-α ELISA MAX Deluxe (BioLegend, San Diego, CA, USA) according to the manufacturer’s instructions.
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3

Multiparameter Phenotyping of Antigen-Specific T Cells

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After peptide stimulation, the cells were washed with PBS containing 5% FCS and stained with amine-reactive viability stain (Live/dead fixable aqua dead cell stain kit; Invitrogen) for 30 min at 4°C. After washing, pMHC-spheromers were added to screen the epitope-specific CD8+ and CD4+ T cells. The samples were stained for 30 min at 4°C in 100 μl volume. After spheromer staining, the cells were washed, fixed and permeabilized with cytofix/cytoperm buffer (BD Biosciences) for 20 min. The permeabilized cells were stained with ICS antibodies (anti-IL2 (clone MQ1-17H12, Biolegend), anti-TNFα (clone Mab11, BD Biosciences), anti-IFNγ (clone B27, BD Biosciences) and anti-GranZB (clone QA16A02, Biolegend)) for 20 min at room temperature in 1X perm/wash buffer (BD Biosciences). Cells were then washed twice with perm/wash buffer and once with staining buffer before acquisition using BD LSRII flow cytometer. The data was analyzed using FlowJo (v10) software.
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4

PBMC Expansion and Cytokine Analysis

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Freshly thawed PBMCs were cultured overnight at 37°C with 5% CO2 in supplemented RPMI with 10% Human-Ab serum (GeminiBio). The rested cells were washed, and2million PBMCs were stimulated using aAPC described previously (23 (link)) in supplemented RPMI with 10% Human-Ab serum plus mixed cytokines (4 ng/mL IL-2, 0.3 ng/mL IL-4, 0.4 ng/mL IL-6, 0.2 ng/mL IL-1b, and 1 ng/mL IFN-γ). On day 7, 2 million thawed PBMCs were replated with aAPCs. The cells were fed on days 3, 5, 10, and 12. On day 14, cells were stimulated with aAPCs and Golgi plug for 6 hours and then stained with tetramers (LLL and YLQ, NIH Tetramer Core Facility; M1 and MART1 from MBL; and LLY from Tetramer Shop) at room temperature for 30 minutes before staining with the LIVE/DEAD fixable aqua dead cell stain kit (Invitrogen) and anti-CD3 (clone SK7) and anti-CD8 (clone SKI) antibodies at 4°C for 30 minutes. Cells were subsequently fixed and permeabilized using the Cytofix/Cytoperm kit (BD Biosciences — Pharmingen) and stained with anti–IFN-γ (clone 4S.B3) and anti–TNF-α (clone MAb11) antibodies at 4°C for 30 minutes. Antibodies were purchased from Biolegend unless otherwise stated. Samples were acquired using the Attune flow cytometer (Invitrogen), and analyses were performed using FlowJo 10.7.1 software.
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5

Vaccine-specific T-cell Phenotyping

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To determine by flow cytometry the phenotype and cytokine profiles of vaccine-specific CD4+ and CD8+ T-cells 12 days after in vitro stimulation (IVS), patient PBMCs were re-challenged with individual peptides overnight at 37 °C, 5%CO2 in presence of Brefeldin A (51-2301KZ, BD Bioscience). The next day, the cells were washed with PBS and stained for 20 min on ice with anti-CD3 (clone SK7; # 344840, Biolegend), anti-CD8 (clone RPA-T8; #301042, Biolegend), anti-CD4 (clone RPA-T4; #558116, BD Biosciences), and a viability dye Zombie UV (#77474, Biolegend). After fixation and permeabilization for 20 min at 4 °C (BD Bioscience Cytofix/Cytoperm Kit), anti-CD154 (CD40-L, clone 24–31; #310826, Biolegend), anti-Granzyme B (clone GB11; #GRB17, Invitrogen), anti-Perforin (clone B-D48; #353310, Biolegend), anti-IL-2 (clone MQ1-17H12; #559334, BD Biosciences), anti-TNF-α (clone MAb11; #557647, BD Biosciences), and anti-IFN-γ (clone B27; #554702, BD Biosciences). All samples were acquired on a 5-laser BD FORTESSA instrument equipped with the FACS DiVa software. Analyses were performed with FlowJo v10.5 (FLOWJ,.LLC, Ashland, OR, USA) and SPICE 6 software.
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6

Multiparameter Flow Cytometry of Cytokine Secretion

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Mononuclear cells were incubated with PMA (50 ng/mL) and ionomycin (500ng/mL) or cultured in RPMI containing 10% FBS (R10) alone. Samples were incubated at a concentration of 10 µg/mL, and Golgi Plug (brefeldin A) and Golgi Stop (monensin) were included at 10 µg/mL. Samples were incubated for overnight at 37°C in 5% CO2 and then permeabilized using Fix & Perm reagents (BD Bioscience) and stained intracellularly with anti–IFN-γ (clone B27) and anti–TNF-α (clone Mab11). At the end of stimulation, cells were washed once with FACS wash (PBS containing 2% [vol/vol] FBS and 0.25% of sodium azide) and surface stained with anti-CD3, anti-TCR7.2 (3C10), anti-Ki67 (B56) anti-CD8 (SK1), anti-CD4 (OKT4) Cell stain at room temperature for 30 minutes. Cells were then fixed with Cytofix/Cytoperm (BD Pharmingen) for 20 minutes at 4°C and washed with Perm wash (BD Pharmingen). Cells were then incubated for 30 minutes at 4°C with antibodies specific to IFN-γ and TNF-α, washed once with Perm wash and once with FACS wash, and resuspended in PBS containing 1% formalin. Cells were acquired on a BD FACS Canto II Immunocytometric system. FlowJo for Windows, Ver.10.0.8 (FlowJo LLC, Ashland, OR, USA) was used to perform the analysis. At least 100,000 events were acquired for each samples.
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