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11 protocols using mda mb 436

1

Culturing Diverse Breast Cancer Cell Lines

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The human breast cancer cell lines MDA‐MB‐231, SKBR‐3, MDA‐MB‐468, ZR‐75‐1, BT474, MCF‐7 and T47D and normal breast epithelial cell line MCF‐10A were purchased from American Type Culture Collection (ATCC). MCF10A cells were cultured in DMEM/F12 (Sigma) supplemented with 5% horse serum (Thermo Fisher Scientific), 20 ng/mL EGF (BD Biosciences), 0.5 mg/mL hydrocortisone (Sigma‐Aldrich), 100 ng/mL cholera toxin (Sigma‐Aldrich), 10 mg/mL insulin (Gibco) and pen/strep. MDA‐MB‐231 cells were cultured in Leibovitz's L‐15 medium with 10% FBS at 37 1C without CO2. MDA‐MB‐436, ZR‐75‐1 and BT474 cells were cultured in RPMI‐1640 (Sigma) medium supplemented with 10% FBS. MCF‐7 were cultured in MEM (10% FBS, 1% NEAA, 0.01 mg/mL bovine insulin (Sigma‐Aldrich), 50 units/mL penicillin and 50 μg/mL streptomycin sulphate). T47D were cultured in RPMI medium (10% FBS, 1% NEAA, 50 units/mL penicillin and 50 μg/mL streptomycin sulphate).
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2

Culturing Breast Cancer Cell Lines

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The breast cancer cell lines BT-20, BT-549, EFM-19, MCF-7, MDA-MB-157, MDA-MB-231, MDA-MB-361, MDA-MB-436, MDA-MB-468, T-47D were purchased from ATCC. NCI-H1703 (KRAS mutant vs wild-type), DLD-1 (KRAS G13D/wt) and DWT7 (del/wt) were previously described [16 (link)]. MCF-7, MDA-MB-157, MDA-MB-231, MDA-MB-361, MDA-MB-436, MDA-MB-468 were cultivated in DMEM, BT-549, EFM-19, T-47D, NCI-H1703 in RPMI, DLD-1 and DWT7 in McCoy media, and BT-20 in Eagle’s Minimum Essential Medium, supplemented with 10% BGS, 2mM glutamine, 100 U/ml penicillin and 10% HEPES (all Sigma-Aldrich). All cell lines were cultured in a humidified incubator at 37°C and 5% CO2 and passaged for < 3 months after thawing a given frozen vial. All cell lines were tested mycoplasma free prior to the experiments (MycoAlert, Lonza) and none was ever treated for mycoplasma throughout the experiments. For 3D culture of tumor spheres, ~10,000 cells/well were grown in black round bottom polystyrene ultra-low attachment microplates (Corning) using serum-free medium composed of DMEM (Sigma-Aldrich), basic fibroblast growth factor (bFGF), and EGF (20 ng/mL each, Sigma-Aldrich), and B27 supplement (Life Technologies).
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3

Cell Culture Protocol for Cancer Research

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The mouse A20 and human K562 cell lines were purchased from the American Type Culture Collection (ATCC TIB-208 and CCL-243 respectively) and cultured based on ATCC guidelines. The MDA-MB-231 and MDA-MB-436 human breast cancer cell lines were obtained from the MD Anderson Characterized Cell Line Core Facility and were cultured in Dulbecco’s Modified Eagle’s Medium-high glucose (DMEM, Sigma, D5976) medium supplemented with 10% FBS (Sigma, F0926) and 1X penicillin-streptomycin. The mouse lung cancer cell line LKR13 was cultured in RPMI-1640 medium supplemented with 10% FBS and 1X penicillin-streptomycin. All cell lines were maintained at 37°C with 5% CO2. Short tandem repeat (STR) profiling and mycoplasma tests were performed by ATCC or the MD Anderson Characterized Cell Line Core Facility.
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4

Breast Cancer Cell Line Cultivation

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The human ER and PR positive BC cell line MCF-7 (ATCC® HTB-22™), HER-2 positive BC cell line SK-BR-3 (ATCC® HTB-30™), TNBC cell lines MDA-MB-436 (ATCC® HTB-130™), BT-20 (ATCC® HTB-19™) and MDA-MB-231 (ATCC® CRM-HTB-26™), and human non-cancerous mammary epithelial cell line (MCF-10A; ATCC® CRL-10317™) were purchased from the American Type Culture Collection (Manassas, USA). MDA-MB-231-luc cell line was a gift by Dr. Bin Gao, Ph.D., Professor from Chinese Academy of Sciences. MCF-7, SK-BR-3 and BT20 cells were maintained in Dulbecco's modified Eagle's medium (DMEM; Sigma, USA) supplemented with 10% FBS, 100 U/mL penicillin and 50 U/mL streptomycin in a humidified atmosphere containing 5% CO2, at 37°C. MDA-MB-231 and MDA-MB-436 cells were maintained in L15 medium (Sigma, USA) supplemented with 10% FBS, 100 U/mL penicillin and 50 U/mL streptomycin in a humidified atmosphere at 37°C. MCF-10A cells were cultured in DMEM/Nutrient Mixture F-12 Ham medium (DMEM/F-12; Sigma, USA) containing 5% horse serum in the presence of 10 μg/mL insulin (Sigma, USA), 20 ng/mL epidermal growth factor (EGF; Sigma, USA), 100 ng/mL cholera toxins (Sigma, USA), 0.5 μg/mL hydrocortisone (Sigma, USA), 100 U/mL penicillin, and 50 U/mL streptomycin. All cells were used in experiments during the linear phase of growth.
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5

Culturing Breast Cancer Cell Lines

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Human mammary epithelial cell line MCF-10A and TNBC cell lines (MDA-MB-231, MDA-MB-436, and BT-549) were purchased from ATCC (Manassas, USA). As for cell culture, MDA-MB-231 and MDA-MB-436 cells were maintained in Leibovitz's L-15 medium (Sigma-Aldrich, St Louis, USA), BT-549 cells in RPMI-1640 medium (ATCC® 30-2001™; ATCC), and MCF-10A cells in complete growth medium. The abovementioned cell lines were maintained in the corresponding culture medium supplemented with 10% fetal bovine serum (HyClone, Logan, USA) and 1% penicillin-streptomycin (Invitrogen, Carlsbad, USA). All cells were cultured in a 5% CO2 incubator at 37°C.
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6

Cell Culture Maintenance of Breast Cancer Lines

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The human breast cancer cell lines MDA-MB-231, MDA-MB-468, MDA-MB-436, SUM159, and BT20 were obtained from American Type Culture Collection (ATCC). All cell lines were authenticated by ATCC and tested to be pathogen-free (including Mycoplasma, bacteria, and fungi). All cells were used within 6 months of resuscitation. MDA-MB-231, MDA-MB-468, SUM159, and BT20 were maintained as previously described.[42 (link)] MDA-MB-436 were maintained in Dulbecco’s Modified Eagle’s Medium (DMEM) supplemented with 10% fetal bovine serum (Sigma Aldrich), 100 IU/ml penicillin (Life Technologies), and 100 µg/ml streptomycin (Life Technologies).
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7

Culturing TNBC and HEK293 Cell Lines

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HMEC; TNBC cell lines MDA-MB-231, MDA-MB-436, BT-20, BT-549, and MDA-MB-361; and HEK cell line HEK293 were purchased from the ATCC. MDA-MB-231, MDA-MB-436, and HEK293 cells were cultured in a mixture of Dulbecco’s modified Eagle’s medium and F12 medium supplemented with 10% fetal bovine serum and a 100-U/mL penicillin-streptomycin solution (Sigma-Aldrich). HMEC cells were maintained in a nutrient mixture consisting of Dulbecco’s modified Eagle’s medium/F12 medium supplemented with 5% horse serum, epidermal growth factor, hydrocortisone, insulin, and cholera toxin. BT-549 cells were cultured in RPMI-1640 medium, and BT-20 and MDA-MB-361 cells were cultured in Eagle’s minimum essential medium. Cell lines were authenticated in a core laboratory at The University of Texas MD Anderson Cancer Center. All cultured cells were incubated at 37°C in a water-saturated 95% air-5% CO2 atmosphere.
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8

Cell Line Maintenance and Culture

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MCF-7, MDA-MB-231, T74D, HCC-1143, MDA-MB-436, 293T and HMEC cells were purchased from the American Type Culture Collection (ATCC). These cells were used for cDNA library generation (RIP-seq and RNA-seq) and a variety of experiments described herein. MCF-7 cells were maintained in Minimum Essential Medium Eagle (Sigma-Aldrich, M1018) supplemented with 5% calf serum and 1% penicillin/streptomycin. MDA-MB-231, T74D, HCC- 1143, and MDA-MB-436 cells were maintained in RPMI (Sigma-Aldrich, R8758) supplemented with 10% fetal bovine serum and 1% penicillin/streptomycin. 293T cells were cultured in DMEM (Sigma-Aldrich, D5796) supplemented with 10% fetal bovine serum and 1% penicillin/streptomycin. Primary human mammary epithelial cells (HMEC) were maintained in Mammary Epithelial Cell Basal Medium (ATCC, PCS-600–030) supplemented with Mammary Epithelial Cell Growth Kit (ATCC, PCS-600–040). All cell lines were tested and verified as mycoplasma-free every 6 months.
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9

Culturing Mammary and Kidney Cell Lines

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The human mammary epithelial cell line MCF-10A and TNBC cell lines MDA-MB-436, MDA-MB-231, MDA-MB-468, BT-549, BT-20 and Human Embryonic Kidney 293 (HEK293) cells were purchased from the American Type Culture Collection (Manassas, VA). MDA-MB-436, MDA-MB-231, MDA-MB-468, BT-549, BT-20 and HEK293 cells were cultured in Dulbecco's modified Eagle's medium (DMEM)/F12 supplemented with 10% FBS and a 100-U/ml penicillin-streptomycin solution (Sigma). MCF-10A cells were maintained in a nutrient mixture consisting of DMEM/F12 supplemented with 5% horse serum, epidermal growth factor, hydrocortisone, insulin and cholera toxin. All cultured cells were incubated at 37°C in a water-saturated 95% air–5% CO2 atmosphere.
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10

Establishment of Paclitaxel-Resistant TNBC Cell Lines

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The human cell lines of TNBC, MDA-MB-231, and MDA-MB-436 were obtained from The Cell Bank of Type Culture Collection of Chinese Academy of Sciences (Shanghai, China) and cultured with Dulbecco's Modified Eagle's medium (Gibco, Thermo Fisher Scientific, Inc.) supplemented with 10% fetal bovine serum and 1 × penicillin streptomycin (Corning) in a 37°C incubator with an atmosphere of 5% CO2 and 95% air. MDA-MB-231 and MDA-MB-436 paclitaxel-resistant cell lines were established by gradual administration of increasing concentration of paclitaxel (Sigma-Aldrich, USA) into culture medium from 1 nM to 100 nM for 6 months. The medium with paclitaxel was changed every two days.
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