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76 protocols using decanoic acid

1

Synthesis of Organic Compounds

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Toluene (99.8%), methyl alcohol (99.9%), and nitric acid (68.0–70.0%) were purchased from Samchun. Tetrahydrofuran (THF) was obtained from Duksan. Hydrochloric acid (36.5–38.0%) was ordered from J.T.Baker. Silk fibroin (5% solution) was purchased from Advanced BioMatrix. Sodium nitrite, 6-bromo-1-hexene, chloroplatinic acid hexahydrate (H2PtCl6 ∙ 6H2O), decanoic acid, hydrazine monohydrate, silver acetate, dodecylamine (DDA), lead(II) bromide, methylammonium bromide (MABr), 4-methoxyaniline, sodium hydride, and tetrabutylammonium borohydride (TBAB) were obtained from Sigma-Aldrich. AZ-5214E was used as photoresist (PR). Sodium hydroxide, phenol, and petroleum ether were ordered from Daejung. N,N-dimethylformamide (DMF) was purchased from Honeywell. Silicone elastomer base and silicone elastomer curing agent (Sylgard 184) were obtained from Dow Corning.
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2

Purification and Characterization of Organic Compounds

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All deionized water was obtained from a Milli-Q2 system and exhibited a specific resistance of at least 18 MΩ cm. Methanol (99.8%) and 1-pentanol (≥99%) were obtained from Sigma-Aldrich (Milwaukee, WI), as were tetraoctylammonium bromide (TOABr) (98%), tetraoctylammonium chloride (TOACl) (≥97%), menthol (99%), and decanoic acid (98%). All were employed without further purification. Concentrated hydrochloric acid (Optima™ grade), acetone (Optima™ grade), 1-propanol (HPLC grade), 1-butanol (HPLC grade), and hexane (HPLC grade), were purchased from Fisher Scientific (Pittsburgh, PA), while standard (0.100 N) sodium hydroxide solution was obtained from Ricca Chemical Company (Batesville, IN). Ethanol (≥99.5%) was purchased from Decon Labs Inc. (King of Prussia, PA). For liquid scintillation counting (LSC), Ultima Gold™ (Perkin Elmer Corp., Waltham, MA) LS cocktail was employed.
With the exception of phenol (Moravek Biochemicals, Brea, CA) and toluene (American Radiolabeled Chemicals, St. Louis, MO), all 14C-labeled reagents (aniline, benzoic acid, chlorobenzene, phthalic acid, p-toluic acid, and salicylic acid) were obtained from Sigma-Aldrich.
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3

Comprehensive Phytochemical Profiling of Extracts

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All the chemicals and reagents involved in the extraction processes, total polyphenolic content, antioxidant activity experiments and the chemical standards (1-hexanol, 2-Thujene, 3-octanone, 5-Amino-1-ethylprazole, Allylbenzene, Camphene, Caryophyllene oxide, Decanoic acid, Docosane, Germacrene D, Hexadecane, HexaDecanoic acid, Lavandulol, Limonene, Linalool, Linalool acetate, Nerol, Nerolidol, Ninanal, TetraDecanoic acid, Tricosane, α-Copaene, α-Humulene, α-Ter-pinene, β-Bourbonene, β-Caryophyllene, β-Copaene, β-Cubenene, β-Farnesene, β-Gurjunene, β-Myrcene, β-Pinene) used in the identification of phenolic and aromatic compounds from the extracts were acquired from Sigma Aldrich Company (St. Louis, MO, USA).
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4

Comprehensive Analytical Standards for Wine Aroma Profiling

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Chromatographically pure standards included ethyl acetate, ethyl isobutyrate, isobutyl acetate, butyl acetate, ethyl 2-methylbutyrate, 2-methyl-1-propanol, isoamyl acetate, 1-butanol, 3-methyl-1-butanol, ethyl hexanoate, hexyl acetate, propanoic acid, ethyl L(-)-lactate, 1-hexanol, cis-3-hexenol, ethyl octanoate, 1-heptanol, 2,3-butanediol, 1-octanol, isobutyric acid, diethyl succinate, L-α-terpineol, phenethyl acetate, hexanoic acid, benzyl alcohol, phenylethyl alcohol, octanoic acid, decanoic acid, ethyl lactate, ethyl decanoate (Sigma-Aldrich, Shanghai, China). Ultrapure 18.2 MΩ cm water used for these experiments was produced from the Milli-Q Ultrapure water system (Human Corp., Seoul, Korea). Absolute ethanol (analytically pure) was purchased from Sichuan Xilong Chemical Industry Co. Ltd. (Chengdu, Sichuan, CHN).
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5

Fluorescent Dye Acquisition for Bioassays

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Bovine serum albumin (BSA) was purchased from Equitech-Bio, Inc. (Kerrville, TX, USA). Decanoic acid, sodium hydroxide, Hoechst 33258 (H), and fluorescein (F) were purchased from Sigma–Aldrich (Milwaukee, WI, USA). Coumarin 540A (C) was purchased from the Exciton Chemical Co. Inc. (Dayton, OH, USA). Rhodamine B (R) was purchased from the Eastman Kodak Company (Rochester, NY, USA).
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6

Decanoic Acid Signaling Pathway Analysis

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Decanoic acid (purity ≥ 98.0%) was purchased from Sigma-Aldrich (St. Louis, MO, USA). HGF was obtained from PeproTech (Offenbach, Germany). Antibodies of Cyclin D1, β-actin, IAP-1, Akt, PARP, Bcl-2, COX-2, and Survivin were obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Antibodies of ERK, MEK, PI3K, c-Met, p-ERK, p-MEK, p-AKT, p-PI3K, and cleaved caspase-3 were procured from Cell Signaling Technology (Beverly, MA, USA).
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7

Depolymerization of Organosolv Lignins

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Dihydroconiferyl alcohol (DCA, 98%), octanoic acid (≥98%), decanoic acid (≥98%), lauric acid (for synthesis), tert-butanol (≥99%), propyl gallate (PG, ≥98%), ethyl acetate (≥99.5%), acetonitrile (≥99.9%), 2-Chloro-4,4,5,5-tetramethyl-1,3,2-dioxaphospholane (TMDP), N-Hydroxy-5-norbornene-2,3-dicarboxylic acid imide (NHND, 97%), 5% Pd/C and 2,2-diphenyl-1-picrylhydrazyl (DPPH) radicals were purchased from Sigma-Aldrich. (Hoeilaart, Belgium). Immobilized lipase B from C. antarctica (Novozym® 435) was a gift from Novozymes (Bagsvaerd, Denmark). Molecular sieves (3 Å, 1.6–2.5 mm, technical, water absorption capacity 0.2 g/g) were acquired at VWR. Hexanoic acid (98%) and silica gel 60 (42–60 µm, 230–400 mesh) were purchased from Merck (Hoeilaart, Belgium). Petroleum ether (b.p = 40–60 °C), butylated hydroxytoluene (BHT, 99.8%) and butylated hydroxyanisole (BHA, 98%) were purchased from Acros Organics (Geel, Belgium).
Technical organosolv lignins were supplied by CIMV (botanical origin: wheat straw) and Fraunhofer (botanical origin: beech wood). These lignins were depolymerized as described in Section 2.6.
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8

Lipid Profiling of Adipose Tissues

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The lipids in VAT and SAT were extracted using the Bligh and Dyer method23 (link). The collected adipose tissue (300 mg) was mixed with chloroform/methanol/dH2O (1:2:1 v/v) and sonicated six times for 10 s (each time). The chloroform–lipid layer was then dried under N2. The extracted lipids were methylated with a methylation kit (Nacalai Tesque, Kyoto, Japan). A methyl heptadecanoate solution (20 μl of 0.02 g/300 μl toluene) was added as an internal standard. Gas chromatography coupled with a flame ionization detector was used to measure the fatty acid methyl esters (GC-2010, Shimadzu Co., Ltd., Kyoto, Japan). The injector port and detector were set to 250 °C. The oven temperature was programmed to increase from 90 °C to 240 °C at 5 °C/min. The peak area of each lipid species was normalized with respect to the internal standard. The amount of fatty acids was calculated from a gas chromatography calibration curve of standard fatty acids (decanoic acid, palmitic acid, oleic acid, and linoleic acid), which were purchased from Sigma-Aldrich (St. Louis, MO, USA) and used without further purification.
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9

Fatty Acid Derivatization for GC-MS Analysis

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Prior to Gas Chromatography-Mass Spectrometry (GC-MS) analysis, active fractions and commercial decanoic acid, undecanoic acid, dodecanoic acid, tridecanoic acid, and tetradecanoic acid (purity > 98%; Sigma–Aldrich, St. Louis, MI, USA) were methylated and ethylated. Samples (30 mg) were diluted with 10 mL acidified methanol or ethanol (1% sulfuric acid) and stirred for 12 h at room temperature. The product of the reaction was suspended in an aqueous solution of 20% Na2CO3 (20 mL) and extracted with CHCl3 (3×, 20 mL, each one) and the solvent was eliminated under vacuum until dry. These derivatives were stored at 4 °C until use in assays [60 (link)].
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10

Volatile Compounds Analysis Protocol

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2-Pentanone, diacetyl, acetoin, 2-undecanone, butyl acetate, methyl hexanoate, methyl caprate, ethyl caprate, ethyl butyrate, ethyl hexanoate, 3-methylbutanal, benzaldehyde, pentanal, nonanal, octanal, acetic acid, propionic acid, isobutyric acid, butyric acid, isovaleric acid, hexanoic acid, octanoic acid, decanoic acid, valeric acid, δ-dodecalactone, (Z)-dairy lactone, δ-caprinolactone, γ-dodecalactone, dichloromethane and n-alkane standards (C6–C30) were purchased from Sigma-Aldrich (St. Louis, MO, USA). 2-Octanol (internal standard, IS) was purchased from Dr Ehrenstorfer GmbH, Augsburg, Germany. All of the chemicals were of chromatographic grade and had a purity>98 %.
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