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Quantstudio real time polymerase chain reaction system

Manufactured by Thermo Fisher Scientific
Sourced in United States

The QuantStudio Real-Time PCR System is a laboratory instrument designed to perform real-time polymerase chain reaction (PCR) analysis. It is capable of detecting and quantifying nucleic acid targets in samples through the use of fluorescent probes or dyes.

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4 protocols using quantstudio real time polymerase chain reaction system

1

Validation of ARGs Expression in EAC

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To verify ARGs expression levels in EAC and normal tissues, we conducted the experimental validation in 15 EAC patients’ specimens who received esophagectomy from 2019 January to 2020 January in Shanghai East Hospital, Tongji University School of Medicine. Ten normal esophageal mucosal tissues were used as control. This study was approved by the Internal Review Board of Shanghai East Hospital, Tongji University School of Medicine.
Total RNA from EAC specimens and normal tissues was purified using RNAiso plus (Takara, Dalian, China). Complementary DNA (cDNA) was synthesized from 1 μg of total RNA using a PrimeScript® RT reagent Kit with gDNA (genomic DNA) Eraser (Takara). TB Green® Premix Ex Taq® II kit (Takara) was used to detect the indicated RNA levels on the QuantStudio Real-Time polymerase chain reaction (PCR) System (Applied Biosystems, USA) or the CFX96 Real-Time System (Bio-Rad, USA). The relative expression levels of the candidate ARGs were normalized to endogenous GAPDH (glyceraldehyde-3-phosphate dehydrogenase). The primers synthesized and by GENEWIZ company, Suzhou, China. The primers are listed in Supplementary Table S1.
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2

Genotyping of SRBD1 SNPs

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Genomic DNA was extracted from peripheral blood using a MG Blood Genomic DNA Extraction SV kit (MGmed, Seoul, Republic of Korea), according to the manufacturer's instructions. We evaluated 2 SNPs: rs3213787 and rs11884064 of SRBD1. Genotyping for rs3213787 polymorphism was conducted using the TaqMan SNP Genotyping Assay (assay ID: C___2773863_1; Applied Biosystems, Foster City, CA). Genotyping for the rs11884064 polymorphism was conducted using the TaqMan SNP Genotyping Assay (assay ID: C___1713255_20). SNP genotyping reactions were performed using the QuantStudio real-time polymerase chain reaction (PCR) system (Applied Biosystems) under the PCR conditions described by the manufacturer. After the PCR amplification, allelic discrimination was performed using the same instruments (QuantStudio).
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3

Validation of ARGs Expression in EAC

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To verify ARGs expression levels in EAC and normal tissues, we conducted the experimental validation in 15 EAC patients' specimens who received esophagectomy from 2019 January to 2020 January in Shanghai East Hospital, Tongji University School of Medicine. Ten normal esophageal mucosal tissues were used as control. This study was approved by the Internal Review Board of Shanghai East Hospital, Tongji University School of Medicine.
Total RNA from EAC specimens and normal tissues was puri ed using RNAiso plus (Takara, Dalian, China). Complementary DNA (cDNA) was synthesized from 1 μg of total RNA using a PrimeScript® RT reagent Kit with gDNA (genomic DNA) Eraser (Takara). TB Green® Premix Ex Taq® II kit (Takara) was used to detect the indicated RNA levels on the QuantStudio Real-Time polymerase chain reaction (PCR) System (Applied Biosystems, USA) or the CFX96 Real-Time System (Bio-Rad, USA). The relative expression levels of the candidate ARGs were normalized to endogenous GAPDH (glyceraldehyde-3phosphate dehydrogenase). The primers synthesized and by GENEWIZ company, Suzhou, China. The primers are listed in Supplementary Table S1.
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4

Validation of ARGs Expression in EAC

Check if the same lab product or an alternative is used in the 5 most similar protocols
To verify ARGs expression levels in EAC and normal tissues, we conducted the experimental validation in 15 EAC patients' specimens who received esophagectomy from 2019 January to 2020 January in Shanghai East Hospital, Tongji University School of Medicine. Ten normal esophageal mucosal tissues were used as control. This study was approved by the Internal Review Board of Shanghai East Hospital, Tongji University School of Medicine.
Total RNA from EAC specimens and normal tissues was puri ed using RNAiso plus (Takara, Dalian, China). Complementary DNA (cDNA) was synthesized from 1 μg of total RNA using a PrimeScript® RT reagent Kit with gDNA (genomic DNA) Eraser (Takara). TB Green® Premix Ex Taq® II kit (Takara) was used to detect the indicated RNA levels on the QuantStudio Real-Time polymerase chain reaction (PCR) System (Applied Biosystems, USA) or the CFX96 Real-Time System (Bio-Rad, USA). The relative expression levels of the candidate ARGs were normalized to endogenous GAPDH (glyceraldehyde-3phosphate dehydrogenase). The primers synthesized and by GENEWIZ company, Suzhou, China. The primers are listed in Supplementary Table S1.
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