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E coli rosetta 2 de3 singles competent cells

Manufactured by Merck Group

E. coli Rosetta 2(DE3) Singles Competent Cells are a strain of Escherichia coli bacteria designed for the expression of recombinant proteins. They are engineered to enhance the translation of heterologous genes that contain rare codons found in higher organisms.

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4 protocols using e coli rosetta 2 de3 singles competent cells

1

Cloning and Purification of P. aeruginosa MetRS

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The gene encoding P. aeruginosa MetRS was obtained through PCR amplification (MJ Mini Thermo Cycler, Bio-Rad, Hercules, CA) using P. aeruginosa PAO1 (ATCC 47085) genomic DNA as a substrate. A forward primer (5′-ATATGCTAGCTCCGAACCACGCAAGATC-3′), designed to add an NheI restriction site to the 5′ end of the gene and the reverse primer (5′-CTCTAAGCTTTTACTTGACGCGCTGGC-3′) which was designed to add a HindIII restriction site to the 3′ end of the gene, were used in the PCR. The PCR product was inserted into a pET-28b(+) plasmid (Novagen) digested with NheI/HindIII. The recombinant plasmid was transformed into E. coli Rosetta 2(DE3) Singles Competent Cells (EMD Millipore, Danvers, MA).
The E. coli bacterial cultures were grown in Terrific Broth containing 25 μg/mL of kanamycin and 50 μg/mL of chloramphenicol at a temperature of 37 °C to an optical density (A600) of 0.6–0.8. The over-expression of P. aeruginosa MetRS in the cultures was induced by addition of isopropyl β-D-1-thiogalactopyranoside (IPTG) to a concentration of 0.25 mM. Growth of the culture was continued for 2 hours post-induction, and cells were harvested using centrifugation (10,000 g, 30 min, 4 °C). Fraction I lysates were prepared as previously described [7 (link)]. P. aeruginosa MetRS was purified to more than 98% homogeneity as previously described [6 (link)].
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2

Cloning and Purification of P. aeruginosa LeuRS

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The gene encoding P. aeruginosa LeuRS was obtained through PCR amplification (MJ Mini Thermo Cycler, Bio­Rad, Hercules, CA) using P. aeruginosa PAO1 (ATCC 47085) genomic DNA as a substrate. A forward primer (5’-gaacgctagccacgagcaatatcagccact-3’), designed to add an Nhel restriction site to the 5’ end of the gene, and a reverse primer (5’-ggataagctttcagttggcgacgatgttg −3’), which was designed to add a HindIII restriction site to the 3’ end of the gene, were used in PCR. The PCR product was inserted into a pET-28b(+) plasmid (Novagen) digested with NheI/HindIII. This resulted in the gene, encoding P. aeruginosa LeuRS, fused to an upstream region encoding six histidine residues. The recombinant plasmid was transformed into E. coli Rosetta 2(DE3) Singles Competent Cells (EMD Millipore, Danvers, MA). Bacterial cultures were grown, expression of the target protein induced and P. aeruginosa LeuRS was purified as described [10 (link)].
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3

Purification of Human RIG-I Protein

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The human RIG-I protein was expressed and purified as described previously (Ren et al., 2019 (link)). In brief, RIG-I was fused to an N-terminal 6xHis tag and a SUMO tag, followed by ULP1 digestion site in ChampionTM pET SUMO vector (ThermoFisher Scientific). This construct was overexpressed in E.coli Rosetta™ 2(DE3) Singles™ Competent Cells (Millipore Sigma). RIG-I expression was induced by IPTG (0.5 mM) when OD600 reached 0.6 and proceeded for 20–24 hours at 16 °C. The pellets were lysed in buffer (25 mM HEPES, pH 8.0, 300 mM NaCl, 10% Glycerol, 5 mM BME) supplemented with EDTA-free Protease Inhibitor Cocktail (Sigma), followed by nickel affinity chromatography using Ni-NTA Superflow beads (Qiagen). RIG-I was treated by ULP1 to remove the SUMO tag, followed by cation exchange and size exclusion chromatography, using a HiTrap Heparin HP column (GE Healthcare) and then a Superdex 200 Increase 10/300 GL column (GE Healthcare). RIG-I was pooled in a storage buffer (25 mM HEPES, pH 7.4, 200 mM NaCl, 5% Glycerol, 5 mM BME) for use in further experiments. RIG-I used in cryo-EM studies was pooled in buffer without glycerol.
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4

Purification of Human RIG-I Protein

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The human RIG-I protein was expressed and purified as described previously (Ren et al., 2019 (link)). In brief, RIG-I was fused to an N-terminal 6xHis tag and a SUMO tag, followed by ULP1 digestion site in ChampionTM pET SUMO vector (ThermoFisher Scientific). This construct was overexpressed in E.coli Rosetta™ 2(DE3) Singles™ Competent Cells (Millipore Sigma). RIG-I expression was induced by IPTG (0.5 mM) when OD600 reached 0.6 and proceeded for 20–24 hours at 16 °C. The pellets were lysed in buffer (25 mM HEPES, pH 8.0, 300 mM NaCl, 10% Glycerol, 5 mM BME) supplemented with EDTA-free Protease Inhibitor Cocktail (Sigma), followed by nickel affinity chromatography using Ni-NTA Superflow beads (Qiagen). RIG-I was treated by ULP1 to remove the SUMO tag, followed by cation exchange and size exclusion chromatography, using a HiTrap Heparin HP column (GE Healthcare) and then a Superdex 200 Increase 10/300 GL column (GE Healthcare). RIG-I was pooled in a storage buffer (25 mM HEPES, pH 7.4, 200 mM NaCl, 5% Glycerol, 5 mM BME) for use in further experiments. RIG-I used in cryo-EM studies was pooled in buffer without glycerol.
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