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20 protocols using af0639

1

Profiling Tendon Tissue Protein Expression

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The total protein of peritendinous tissues was isolated using cell lysis buffer (P0013, Beyotime Institute of Biotechnology, China) as per manufacturer’s instructions. Western blotting was performed following the standard protocol [17 (link)]. Antibodies against HO-1 (1:1000 dilution, ab68477, Abcam, UK), Nrf2 (1:1000 dilution, AF0639, Affinity Biosciences, USA), NF-κB (1:1000 dilution, Rabbit mAb #8242, CST, USA), p-NF-κB (Ser536) (1:1000 dilution, Rabbit mAb #3033, CST, USA), and β-Actin (1:2000 dilution, Rabbit mAb #4970, CST, USA) were used for Western blotting.
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2

Nrf2 and PP65 Regulation in Chondrocytes

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The proteins Nrf2 and PP65 were assessed in vitro. ATDC5 cells were seeded in 6-well plates and divided into the control, IL-1β, and IL-1β plus CDDO-Me (0.6 μM) groups. ATDC5 cells were pretreated with CDDO-Me for 24 h followed by stimulation with IL-1β (10 ng/mL) for 30 min. To assess Sox9 and MMP13 expression, ATDC5 cells were divided into the control, CDDO-Me (0.6 μM), IL-1β, and IL-1β plus CDDO-Me (0.6 μM) groups. The cells were treated with CDDO-Me (0.6 μM) or IL-1β or were treated with IL-1β plus CDDO-Me for 48 h. The cells were washed three times in PBS and then fixed with 4% paraformaldehyde for 30 min, followed by permeabilization using 0.1% Triton X-100 diluted in PBS for 20 min. Then, the sample was blocked with goat serum for 1 h at 37 °C and incubated overnight at 4 °C with the following primary antibodies: anti-MMP13 (1:1000, Cat.# AF5355, Affinity), anti-Sox9 (1:1000, ab185966, Abcam), anti-phospho-p65 (1:1000, Cat.# AF2006, Affinity), and anti-Nrf2 (1:1000, Cat.# AF0639, Affinity). Next, the samples were incubated with fluorescent secondary antibodies (1:100, Cat. BA1127, Boster) for 1 h at room temperature and labeled with DAPI (Cat. AR1176, Boster) for 30 min. Finally, the slide was sealed with 50% glycerin, and the fluorescence intensity was measured using ImageJ.
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3

Quantitative Bone Histomorphometry Analysis

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After micro-CT scanning, the samples were decalcified in 10% EDTA (pH = 7.4) for 4 weeks, then embedded in paraffin. Histological sections were prepared for hematoxylin and eosin (H&E) and TRAP staining. Immunofluorescence staining was performed with antibodies against TNF-α (1:100; AF7014; Affinity, Cincinnati, OH, USA), Nrf2 (1:100; AF0639; Affinity, Cincinnati, OH, USA), and HO-1 (1:100; AF5393; Affinity, Cincinnati, OH, USA). The images of stained slices were captured under a high-quality microscope (Leica DM4000B). The relative fluorescence of stained slices was quantified by ImageJ software (NIH, Bethesda, MD, USA). The number of OCs and TRAP-positive multinucleated OCs per field (Oc.S/BS) were calculated.
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4

Immunofluorescence Protocol for Nrf2

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Cells were fixed with 4% paraformaldehyde for 15 min. Next, Triton X-100 (0.1%) was used to incubate cells for 30 min. Cell block was conducted with 1% BSA for 15 min. All these operations were performed at room temperature. Primary antibody incubation was performed with Nrf2 antibody (1:100 diluted in PBS) (AF0639, Affinity) overnight at 4 °C. After washing three times with PBS, cells were incubated with Cy3-conjugated goat anti-rabbit IgG (1:200 diluted in PBS) (ab6939, Abcam, UK) for 1 h at room temperature in a dark environment. Finally, nuclei were stained with DAPI. Staining was observed under a BX53 microscope (Olympus).
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5

Kidney Fibrosis and Nrf2 Immunostaining

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Kidney cryosections at 3 μm thickness were fixed for 15 min in 4% paraformaldehyde, followed by permeabilisation with 0.5% Triton for 5 min at room temperature. After blocking with 2% donkey serum for 60 min, the slides were immuno-stained with anti-fibronectin (GB114491, Serviocebio, Wuhan, China), anti-collagen I (GB114197, Serviocebio, Wuhan, China), anti-collagen III (GB111629, Serviocebio, Wuhan, China) and anti-nuclear factor erythroid 2-related factor 2 (Nrf2) (AF0639, Affinity, Changzhou, China) overnight, followed by incubation with rhodamine-labelled goat anti-rabbit IgG (GB112199, Serviocebio, Wuhan, China) and a green fluorescent protein secondary antibody (GB21303, Serviocebio, Wuhan, China) for 1 h at 3°C. Then, 1× PBS was used to wash the slides three times, and the slides were incubated with 5 μg/mL 40,6-diamidino-2-phenylindole solution for 5 min in the dark and then washed five times. Then, an anti-fluorescence quenching agent was used to seal each slide. Sections were scanned by an optical microscope and quantified using Image J software.
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6

Immunofluorescence Analysis of HO-1 and Nrf2

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Brain samples were collected on day 7 after ICH. Brain tissues or cell samples were washed with PBS and permeabilized with 0.1% Triton X-100. Samples were incubated with rabbit anti-HO-1 (1:200, AF5393, Affinity Biosciences) and mouse anti-Nrf2 (1:200; AF0639, Affinity Biosciences) at 4°C overnight. Following PBS washes, the samples were incubated with Alexa Fluor-conjugated secondary antibodies (anti-rabbit 488 or 594, 1:200, A32766, A48284, ThermoFisher Scientific, MA, USA) for 1 hour at room temperature, followed by incubation with 4′,6-diamidino-2-phenylindole (DAPI) for 2 minutes. Images were observed with a fluorescence microscope (Leica DM2500, Leica Co.) and analyzed using ImageJ software (NIH, Bethesda, MD, USA). The allocation signals in the dual-channel overlay images were analyzed with the ImageJ “Co-localization Finder” plugin.
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7

Histological Analysis of Osteoarthritis Progression

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After micro-CT scanning, the samples were decalcified in 10% EDTA (pH = 7.4) for 4 weeks. After embedding in paraffin, histological sections were prepared for H&E staining, safranin O-fast green (S&F) staining and TRAP stainging. Synovitis scores, as well as Osteoarthritis Research Society International (OARSI) scores were calculated as previously reports 36 (link), 37 (link). Immunohistochemical (IHC) staining was performed with antibodies against iNOS (1:100; PA1-036; Thermofisher, Waltham, MA, USA) and Nrf2 (1:100; AF0639; Affinity, Cincinnati, OH, USA). The stained slices were photographed under a high-quality microscope (Leica DM4000B). The percentage of positively stained cells in synovium and subchondral bone was quantified by Image J software.
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8

Protein Expression Analysis in Cells

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After treatment, the cells were harvested and lysed using a cell buffer (WB038, GEFAN, Nanjing, China), and their concentrations were estimated by a BCA kit (GM03, GEFAN). After denaturation, cells were subjected to protein electrophoresis. After transferring to a PVDF membrane (WB041, GEFAN), the membrane was sealed with 5% skim milk. After 2 h, cells were reacted with primary antibodies overnight at 4°C followed by incubation with a goat anti-rabbit secondary antibody IgG H&L (1:3000, S0001, Affinity Biosciences, Cincinnati, OH, USA) for 1 h at 37°C. Finally, a color reagent (E266188, Aladdin, Shanghai, China) was used to visualize the bound antibodies, which were then placed in a chemiluminescent instrument (610020-9Q, Clinx, Shanghai, China). The primary antibodies of the rabbit anti-human Nrf2 (1:2000, AF0639), SOD-1 (1:1500, AF5198), CAT (1:2000, AF7746), HO-1 (1:1500, AF5393), nuclear factor kappa B (NF- κB, 1:1500, AF5006), phospho-IkappaB-alpha (p-IKBα, 1:2000, AF2002), and GAPDH (1:20000, AF7021) were obtained from Affinity Biosciences .
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9

Protein Extraction and Western Blot Analysis

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The protein sample was collected from liver tissues using a protein extraction kit (BC3710, Solarbio, China) or a Nuclear and Cytoplasmic Extraction Reagent (78833, Thermo Fisher, USA). The protein was quantified using a BCA kit (PC0020, Solarbio, China). After separating the protein by SDS-PAGE, the protein was transferred into a polyvinylidene fluoride membrane (10600023, GE Healthcare Life, USA). The membrane was blocked by 5% BSA for 1 hour, then the membrane was reacted with primary antibodies and secondary antibodies. The relative intensity of the protein bands was quantified using ana ECL kit (36208ES60, YEASEN, China) with the iBright FL1500 Imaging System (A44115, Invitrogen, USA). The results were counted by ImageJ2x (Rawak Software, Germany). The primary antibodies and secondary antibodies were as follows: anti-p53 (AF0879, Affinity, USA), anti-β-actin (AF7018, Affinity, USA), Nrf2 (AF0639, Affinity, USA), Lamin B (DF6687, Affinity, USA), Heme oxygenase-1 (HO-1, AF5393, Affinity, USA), glyceraldehyde-3-phosphate dehydrogenase (GAPDH, AF7021, Affinity, USA), and goat anti-rabbit (S0001, Affinity, USA).
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10

Lipopolysaccharide-Induced Inflammation Protocol

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Lipopolysaccharides (LPS) from Escherichia coli O111:B4 (#L2630) was purchased from Sigma-Aldrich (St Louis, MO, USA). 4-Octyl Itaconate (4-OI) was purchased from MCE (Shanghai, China). Primary antibodies against Nrf2 (AF0639) and GCLM (DF7268) were purchased from Affinity Biosciences and GPX4 (14432-1-AP), SLC7A11 (26864-1-AP), HO-1 (10701-1-AP), PTGS2 (12375-1-AP), and CD68 (28058-1-AP), were purchased from Proteintech Group (Wuhan, China). 4-HNE (bs-6313R) for immunohistochemical staining was purchased from Biosss (Beijing, China). Malondialdehyde (MDA) assay kit (A003-1-2), Total glutathione/Oxidized glutathione assay kit (A061-1-1), and tissue iron assay kit (A039-2-1) were purchased from Jiancheng Bioengineering Institute (Nanjing, China). TNF-α, IL-1β, IL-6 ELISA kits were obtained from Cloud-Clone (Wuhan, China). The ROS Fluorescent Probe Kit was used to detect ROS of tissue (KeyGEN, China) and cell (Biosharp, China). Trypan Blue Staining solution (0.4%) was purchased from Biosharp (Hefei, China)
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