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Lentiviral shrna plasmids

Manufactured by Merck Group
Sourced in United States

Lentiviral shRNA plasmids are genetic constructs designed for the delivery and expression of short hairpin RNA (shRNA) molecules in target cells. These plasmids contain the necessary elements for the production of lentiviral particles, which can then be used to transduce and stably integrate the shRNA sequence into the genome of the target cells.

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5 protocols using lentiviral shrna plasmids

1

Lentiviral knockdown and CRISPR targeting of MLKL, RIPK1, and RIPK3

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The shRNA lentiviral plasmids were obtained from Sigma (St Louis, Missouri, USA). The shRNA against human MLKL (NM_152649.4) corresponds to the 3' untranslated region 2025–2045 (shMLKL1) and 1907–1927 (shMLKL2). CRISPR plasmids targeting human RIPK1 (NM_003804) and human RIPK3 (NM_006871) were generated according to Zhang’s protocol [42 (link)]. The sequence for CRISPR-RIPK1 was 5’-CACCGGATGCACGTGCTGAAAGCCG-3’ and CRISPR-RIPK3 was 5’-CAGTGTTCCGGGCGCAACAT-3’. All of the plasmid constructs were confirmed by DNA sequencing. To generate lentiviral particles, HEK293T were co-transfected with packaging plasmid (pCMV-VSV-G) and envelope plasmid (pCMV-dr8.2-dvpr) and either shRNA-non-targeting (shNT; pLKO.1puro) or shRNA-MLKL (shMLKL) or CRISPR-V2 or CRISPR-RIPK1 or CRISPR-RIPK3 plasmids. After 24 h, supernatants were collected and supernatants containing viral particles were filtered through a 0.45 μM sterile filter membrane (Merck Millipore, Darmstadt, Germany). The lentiviral preparation was then used to infect the cells with 8 μg/mL of polybrene (Merck Millipore, Darmstadt, Germany). After 24 h of infection, cells were selected with puromycin (Merck Millipore, Darmstadt, Germany) for a further 48 h.
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2

Genetic Knockdown in Mouse Cells

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The shRNA lentiviral plasmids were purchased from Sigma. The shRNA against mouse ZBP1 (NM_021394) or Noxa (NM_021451.1) corresponds to the 3′-untranslated region. The genomic DNA was isolated for PCR.
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3

Knockdown of KDM1A, USP22 and GSK3β Using Lentiviral shRNA and siRNA

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Lentiviral shRNA plasmids were from Sigma. The shRNAs against human KDM1A (NM_015013) correspond to the coding sequences (CDSs) from 1311 to 1332 (KDM1A-sh1, TRCN0000046071) and from 1975 to 1995 (KDM1A-sh2, TRCN0000046072) relative to the first nucleotide of the start codon. The shRNAs against human USP22 (NM_015276) correspond to the CDSs from 545 to 565 (USP22-sh1, TRCN0000296868) and from 1366 to 1385 (USP22-sh2, TRCN0000296867). The shRNA against human GSK3β (NM_002093) correspond to the CDSs from 1838 to 1848 (GSK3β-sh1, TRCN0000039999) and from 1058 to 1078 (GSK3β-sh2, TRCN0000039564). The siRNAs against USP22 and GSK3β have the same target sequences as the shRNAs respectively. All siRNAs were synthesized by Sigma. Supplementary Table 2 contains detailed information about the siRNA sequence.
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4

Knockdown of KDM1A, USP22 and GSK3β Using Lentiviral shRNA and siRNA

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Lentiviral shRNA plasmids were from Sigma. The shRNAs against human KDM1A (NM_015013) correspond to the coding sequences (CDSs) from 1311 to 1332 (KDM1A-sh1, TRCN0000046071) and from 1975 to 1995 (KDM1A-sh2, TRCN0000046072) relative to the first nucleotide of the start codon. The shRNAs against human USP22 (NM_015276) correspond to the CDSs from 545 to 565 (USP22-sh1, TRCN0000296868) and from 1366 to 1385 (USP22-sh2, TRCN0000296867). The shRNA against human GSK3β (NM_002093) correspond to the CDSs from 1838 to 1848 (GSK3β-sh1, TRCN0000039999) and from 1058 to 1078 (GSK3β-sh2, TRCN0000039564). The siRNAs against USP22 and GSK3β have the same target sequences as the shRNAs respectively. All siRNAs were synthesized by Sigma. Supplementary Table 2 contains detailed information about the siRNA sequence.
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5

Detailed Signaling Pathway Profiling

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Anti-phospho-S473-Akt, anti-phospho-T308-Akt, anti-Akt1, anti-total Akt, anti-phospho-4E-BP1, anti-4E-BP1, anti-phospho-S6K1, anti-S6K1, anti-phospho-S6, anti-S6, anti-phospho-FoxO3, anti-FoxO3, anti-phospho-GSK3 α/β, anti-GSK3 α/β, anti-phospho-IGF1R, anti-IGF1R, anti-phospho-IRS, anti-IRS, anti-phospho-ERK1/2, anti-ERK1/2, anti-TSC2, anti-mTOR, anti-Rictor, and anti-phospho-tyrosine antibodies were purchased from Cell Signaling Technology. Anti-phospho-S422-SGK and anti-Grb10 antibodies were obtained from Santa Cruz Biotechnology. Rapamycin, Torin1, Ku-0063794, BKM-120, GDC-0941, AZD8931, Erlotinib, BMS754807, OSI906, PF431396, PF573228, and SB273005 were purchased from Selleckchem. Cpd22 and PDGFR inhibitor III were purchased from Calbiochem. Anti-integrin α2, anti-integrin αV, and anti-integrin α5 antibodies for flow cytometry were obtained from BD Biosciences. BTT3033 and anti-integrin α2 antibodies for immunoblot analysis were obtained from Tocris and SantaCruz Biotechnology, respectively. Anti-actin and anti-vinculin antibodies, N-methyl-2-pyrrolidone, PEG400, and lentiviral shRNA plasmids were purchased from Sigma.
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