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12 protocols using luperox

1

Cytokine Signaling Pathway Activation

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KRIBB11 and 17-AAG were purchased from Cayman Chemical. MG-132, Puromycin and Luperox were from Sigma-Aldrich. Recombinant human IFNγ (285-IF), IFNβ (8499-IF), TNFα (210-TA), IL-1β (201-LB), IL-6 (206-IL), and mouse IFNγ (485-MI) were from R&D.
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2

Glutathione Peroxidase Activity Assay

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The extract (10 μL) was mixed with an assay medium consisting of 38 mM Tris-HCl (pH 8.8), 2.3 mM EDTA, 4.6 mM NaN3, 228.6 μM GSH, 9.5 mM Luperox® (Sigma-Aldrich), and 476.2 μM Ellman’s reagent (5,5-dithiobis-2-nitrobenzoic acid, DTNB). GSH reacted with DTNB, producing 5-thio-2-nitrobenzoic acid (TNB), whose level was measured spectrophotometrically [25 (link)]. Reactions were carried out at 37 °C in a Nunc U-bottom 96-well plate on a Varioskan LUX Multimode Microplate Reader and the absorbance was measured at 412 nm. GPx activity was expressed in µmol of formed TNB per minute and gram FW.
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3

Antibody-based Mitochondrial Protein Analysis

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Monoclonal anti-actin antibody, Prussian Blue, pantothenate, pantethine, vitamin E, L-carnitine, thiamine, Luperox® and trypsin were purchased from Sigma Chemical Co. (St. Louis, MO). Anti-mitochondrial acyl carrier protein (mtACP), anti-NF-Y, anti-FOXN4 and anti-hnRNPA/B were purchased from Invitrogen/Molecular Probes (Eugene, OR). Anti-phospho-PGC1α was purchased from RD systems. NFS1 antibody and Omega 3 were purchased from Santa Cruz Biotechnology (Santa Cruz, CA). Anti-PANK2, anti-PGC1α, complex 1 activity kit and PDH activity kit were purchased from Abcam (Cambridge, UK). Anti-TFAM was purchased from Cell Signaling. BODIPY® 581/591 C11 was purchased from Thermo-Fisher (Waltham, MA). A cocktail of protease inhibitors (complete cocktail) was purchased from Boehringer Mannheim (Indianapolis, IN). The Immun Star HRP substrate kit was from Bio-Rad Laboratories Inc. (Hercules, CA).
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4

Cytokine Signaling Pathway Activation

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KRIBB11 and 17-AAG were purchased from Cayman Chemical. MG-132, Puromycin and Luperox were from Sigma-Aldrich. Recombinant human IFNγ (285-IF), IFNβ (8499-IF), TNFα (210-TA), IL-1β (201-LB), IL-6 (206-IL), and mouse IFNγ (485-MI) were from R&D.
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5

Mitochondrial Function Assay Compounds

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FCCP, oligomycin, rotenone, antimycin A, TBH70X, tert-Butyl hydroperoxide solution (Luperox), taxol, and Poly-l-Lysine (mol wt 70,000–150,000, 0.01%) were obtained from Sigma. Hoechst 33342, Mitotracker DeepRed, MitoSOX, and SYTOX Green were from ThermoFisher Scientific. TMRE was from Abcam. All compounds were stored at −20 °C except taxol and Hoechst (4 °C). Dyes were stored protected from light. FCCP, rotenone, antimycin A, Hoechst, MitoTracker DeepRed, and SYTOX were stored at −20 °C, TMRE was pre-diluted at 10 μM in media (10×) and aliquoted for single use. MitoSOX was likewise aliquoted for single use30 .
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6

Metabolic Modulation of Myoblast Differentiation

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Oligomycin, antimycin, FCCP, rotenone, AICAR, and Luperox (TBHP) were from Sigma. Antibodies against OXPHOS complexes (ab110413) and PGC-1alpha (ab106814) were from Abcam. Anti-GAPDH was from Cell Signaling (2118), anti-laminin from Dako (Z0097), anti-Tim23 (611223) and anti-RalA from BD (610221). Low glucose differentiation medium for immortalized human myoblasts was DMEM-F12 (US Biological) and for primary human skeletal muscle myoblasts (HSMM, Lonza) was DMEM (Gibco) supplemented with glucose (1 g/l) and 2% HS (Gibco). Galactose medium contained DMEM-F12 supplemented with galactose (1 g/l) and 2% HS.
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7

Oxidative Stress and Hypoxia Assays

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Oxidative stress in both PMFs and HUAFs was induced by adding 10 μM reactive oxygen species (ROS) mimic tert-butyl hydroperoxide (tBHT; Luperox, 458139, Sigma Aldrich, St. Louis, MO, USA) to the culture media for 24 h. To serum starve the cells, DMEM with 1% PenStrep, supplemented with 1% FCSi for PMFs or 3% FCSi for HUAFs, was added to the cells. Different incubation times were tested for serum starvation (Figure S5). An incubation time of 24 h was determined as the most optimal time point. To induce hypoxia, cells in normal culture media were kept in a humidified incubator at 37°C under 1% O2 for 24 h. Absolute Ct values of AF357425 and U6 expression are shown in Figure S6.
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8

Evaluating Candida albicans ROS Sensitivity

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To determine ROS sensitivity in vitro, SD and SC (0.17% YNB, 0.5% ammonium sulfate, 1% complete SC medium without ammonium sulfate [Biomol, Germany]) media were solidified with 2% purified Bacto agar (BD) and the indicated concentrations of tert-butyl hydroperoxide (Luperox; Sigma-Aldrich) added. C. albicans cultures grown overnight were set to an OD600 of 1 in sterile dH2O, 10-fold serial dilutions were prepared (OD of 1, 10−1, 10−2, 10−3, 10−4, and 10−5), and 5 μL from each dilution was spotted. The plates were subsequently incubated for 2 days at 37°C, and images were taken with a ProtoCol2 colony counter (Synbiosis, UK). The experiments were performed in biological triplicates.
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9

Transposase-based Library Preparation

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Menadione (MEN), Luperox® (TBH70X, tert-Butyl hydroperoxide solution, TBOOH), IGEPAL CA-630, Tris-Cl, NaCl, and MgCl2 were purchased from Sigma-Aldrich (St. Louis, MO) TD (Nextera 2× reaction buffer, cat. no. FC-121-1030) and TDE1 (Nextera Tn5 Transposase, cat. no. FC-121-1030) were both purchased from Illumina (San Diego, CA). Qiagen MinElute PCR Purification and Qiagen RNeasy and kits were purchased from Qiagen (Hilden, Germany). CellTiter-Fluor Cell Viability Assay was purchased from Promega (Madison, WI).
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10

Transfection Reagent and Oxidative Stress Protocol

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FuGENE HD transfection reagent was purchased from Promega (Madison, WI). Menadione was purchased from MP Biomedicals (Solon, OH), and Luperox (tert-butyl hydroperoxide solution; TBOOH) was purchased from Sigma-Aldrich Chemical Company (St. Louis, MO). Stock solutions of all test compounds were prepared in 100% Ethanol. MISSION LightSwitch Luciferase Assay Reagent was purchased from Sigma-Aldrich. All oligonucleotides used for gel mobility shift assays and cloning were purchased from Integrated DNA Technologies (Coralville, IA).
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