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174 protocols using snail

1

Western Blot Analysis of EMT Markers

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Cells were lysed in RIPA lysis buffer (Beyotime, Nanjing, China) with the protease inhibitor phenylmethanesulfonyl fluoride (Beyotime). Protein concentrations were determined using a BCA Protein Assay kit (Beyotime). Equal amounts of protein were loaded into each lane of an SDS-PAGE gel. Proteins were then separated with electrophoresis and transferred to a polyvinylidene fluoride membrane (Millipore, Billerica, MA). Each membrane was blocked with 5% skimmed milk for 2 h and then incubated with antibodies against SHARP1 (1:500), E-cadherin (1:1000), N-cadherin (1:1000), vimentin (1:1000), Snail (1:1000), NOTCH1 (1:2500; Epitomics, Burlingame, CA), jagged 1 (1:10000), HES1 (1:2000; Epitomics), or β-actin (1:5000; Epitomics) at 4°C overnight. Peroxidase-linked secondary antibodies against rabbit (1:5000; Epitomics) were used to detect bound primary antibodies. Probed proteins were detected by enhanced chemiluminescent reagents. The data have been normalized to β-actin expression by densitometry and statistical data from at least 3 experiments is graphed to provide additional validation of results.
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2

Flaccidoxide-13-acetate Signaling Pathway

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Flaccidoxide-13-acetate was supplied by Dr. Jui-Hsin Su. Rabbit anti-human Akt, FAK, MMP-2, MMP-9, MMP-13, mTOR, PI3K, TIMP-1, TIMP-2, uPA and phosphorylated Akt, mTOR, and PI3K were purchased from Cell Signaling Technology (Danvers, MA, USA). E-cadherin, N-cadherin, lamin A2, and Snail antibodies were supplied by Epitomics (Burlingame, CA, USA). HRP-conjugated goat anti-rabbit immunoglobulin (IgG) was obtained from Millipore (Bellerica, MA, USA). Thiazolyl blue tetrazolium bromide, streptomycin, penicillin, and DMSO were purchased from Sigma (St. Louis, MO, USA). Goat anti-rabbit and horseradish peroxidase-conjugated immunoglobulin IgG and polyvinylidene difluoride (PVDF) membranes were obtained from Millipore (Bellerica, MA, USA). Fetal bovine serum and DMEM were purchased from Biowest (Nuaillé, France).
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3

Piper betle Stem Bioactivity Analysis

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The stems of Piper betle were collected in Pingtung County, Taiwan in July 2008, which were cultivated by local farmer and bornyl cis-4-hydroxycinnamate identified by Chi-I Chang, National Pingtung University of Science and Technology. Rabbit anti-human MMP-2, MMP-9, uPA, TIMP-1, TIMP-2, FAK, PI3K, p-PI3K, Akt, p-Akt, mTOR, p-mTOR, JNK, p-JNK, Jun, p-Jun, p38, p-p38, ERK, and p-ERK were obtained from Cell Signaling Technology (Danvers, MA, USA). GRB2, Rac, PKC, Ras, RhoA, MEKK3, MEKK7, N-cadherin, E-cadherin, Snail, and Lamin A2 antibodies were obtained from Epitomics (Burlingame, CA, USA). Dimethyl sulfoxide (DMSO), protease inhibitor cocktail, and rabbit anti-human β-actin antibodies were purchased from Sigma (St. Louis, MO, USA). PVDF (polyvinylidene difluoride) membranes and goat anti-rabbit and horseradish peroxidase-conjugated IgG were purchased from Millipore (Bellerica, MA, USA). Chemiluminescent horseradish peroxidase (HRP) substrate was purchased from Pierce (Rockford, IL, USA).
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4

Investigation of TGF-β1 Signaling Pathway

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BBR was obtained from Sigma and was dissolved at a concentration of 100 mM in dimethyl sulfoxide (DMSO, Sigma-Aldrich) as a stock solution (stored at -20°C). It was then diluted to working concentrations with cell culture medium. The maximum final concentration of DMSO was less than 0.1% for each treatment, and was also used in controls. Recombinant human TGF-β1 was purchased from Peprotech. Rabbit monoclonal antibodies against human E-cadherin, Slug, Snail, Vimentin, MMP-2 and MMP-9 were purchased from Epitomics. P-Smad2/3(Ser423/425) and Smad 2/3 were purchased from Cell Signaling. Matrigel (BD Biosciences) and 24-well transwells (Corning) were used.
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5

Western Blot and Immunoprecipitation Protocol

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The cell lysing, western blotting and immunoprecipitation were performed as previously described22 (link). The following antibodies were used: OGT, OGA, GAPDH, XBP1, GFAT, CHOP, CEBPB, Snail, pSnail (S246), Vimentin, Twist, N-cadherin and E-cadherin were from Abcam (MA, USA); O-GlcNAcylation antibody (CTD110.6) was from BioLegend (MA, USA). Chemiluminescent detection was performed using ECL kit (GE healthcare, CA, USA).
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6

Western Blot Analysis of Cell Signaling Proteins

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Total proteins were extracted from the parental and transfected cells lysed in radioimmunoprecipitation assay (RIPA) buffer (Solarbio, Beijing, P.R. China). Protein lysates from each sample were subjected to SDS-PAGE separation and transferred to a polyvinylidene fluoride (PVDF) membrane (Millipore, Bedford, MA, USA). The membrane was incubated with relevant primary antibodies, including Ki67, MMP2, cyclin D1, BCL-2, Akt, p-Akt, Vimentin, Snail, E-cadherin, N-cadherin, and Twist (Abcam, Shanghai, P.R. China), SEPT7 and p65 (Santa Cruz Biotechnology, Dallas, TX, USA), and GAPDH and histone 3 (H3) (ABclonal, Wuhan, P.R. China), followed by incubation with a horseradish peroxidase (HRP)-conjugated secondary antibody (Abcam). Proteins were detected using a SuperSignal protein detection kit (Pierce, Rockford, IL, USA).
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7

Vimentin and Snail Immunohistochemistry

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IHC staining was conducted using a Biotin-Streptavidin HRP Detection Systems (ZSGB-BIO, Beijing, China). Primary antibodies against Vimentin (Proteintech), and Snail (Abcam) were applied. Images were taken by a Leica SCN400 slide scanner (Germany).
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8

Immunoblotting Analysis of EMT Markers

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Equal amounts of whole-cell lysate were loaded onto a 10% or 12% sodium dodecyl sulfate-polyacrylamide gel and assayed by enhancing the chemiluminescence as described by the manufacturer (PerkinElmer Inc., Waltham, MA, USA). The blotting membranes were probed with antiserum of NIK, IĸBα, Akt, phospho-AktS473, Slug (Cell Signaling Technology, Danvers, MA, USA), MMP9, Snail (Abcam, Cambridge, MA, USA), MIEN1 (OriGene Technologies), NDRG1 (Invitrogen Thermo Fisher Scientific Inc., Waltham, MA, USA), E-cadherin (Santa Cruz Biotechnology, Santa Cruz, CA, USA), N-cadherin (Abgent, San Diego, CA, USA), or β-actin (Merck Millipore, Burlington, MA, USA). The intensities of different bands were analyzed using the GeneTools of ChemiGenius (Syngene, Cambridge, UK).
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9

Western Blot Analysis of Metabolic Regulators

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Whole-cell protein lysates were prepared with RIPA buffer at 4°C. Standard Western blotting was carried out using whole-cell protein lysates, primary antibodies against ABHD5 (Abcam), E-cadherin (Abcam), Snail (Abcam), ENO1 (Abcam), GLUT1 (Abcam), LDHA (Abcam), phosphorylated AKT (p-AKT; Cell Signaling Technology, Danvers, MA, USA), AKT (Cell Signaling Technology) and a secondary antibody (Beyotime, Shanghai, China). Equal protein loading was ascertained by using an anti-GAPDH antibody (Cell Signaling Technology).
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10

Evaluating Epithelial-Mesenchymal Transition

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Samples were solubilized with an equal volume of loading buffer (125 mM Tris-HCl, pH 6.8, 4% sodium dodecyl sulfate, 20% glycerol, 0.05% bromophenolblue, 5% β-mercaptoethanol) and were boiled for 10 minutes, then samples were separated by sodium dodecyl sulfate polyacrylamide gel electrophoresis, followed by transferring to polyvinylidene difluoride membranes and detecting by immunoblotting with primary antibodies against E-cadherin (1:500, Abcam), vimentin (1:500, Abcam), p-Smad2 (1:500, Abcam), p-Smad3 (1:500, Abcam), Smad4 (1:500, Abcam), and Snail (1:500, Abcam), respectively at 4°C overnight. Then HRP-conjugated secondary antibody (CST, Boston, MA) was incubated for 1 hour at room temperature, and visualized by using ECL detection kit (CST) [3 (link)]. β-Actin (1:1,000, Abcam) was used as an internal control.
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